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m.infos.lmerMod() and
m.infos.nest.lmerMod(): fixed a crash when
emmeans returns asymptotic confidence interval columns
(asymp.LCL/ asymp.UCL) instead of the df-based
names (lower.CL/upper.CL). The CI column names
are now detected dynamically at runtime.testthat test suite covering
SK with formula, aov, and
lm inputs for balanced and unbalanced designs, as well as
summary, print, plot, and
xtable methods.SK_intro (HTML, via R Markdown)
and SK_intro_pdf (PDF, via knitr/LaTeX), both covering
quick start, accepted input classes, unbalanced data, RCBD, factorial
and split-plot designs, visualisation options, tabular output, and mixed
models.README.md fully rewritten: badges (CRAN status,
downloads, checks, lifecycle, licence), key features, installation
instructions (CRAN and GitHub), quick-start examples, project layout,
contributing guide, and roadmap.doBy package.
doBy::LSmeans produced unwanted side-effects in the console
and in Sweave/knitr documents.emmeans package as a dependency.emmeans.DESCRIPTION: added knitr,
rmarkdown, and testthat (>= 3.0.0) to
Suggests; set VignetteBuilder: knitr; added
BugReports URL; removed the obsolete LazyLoad
field.dispersion= replaces the abbreviated di=),
and fixed three bugs: duplicate variable sk4 in
FE.R (renamed to sk5/sk6),
spurious double comma in RCBD.R, and wrong variable name
u_sk8 in CRD.R (renamed to
u_sk4).xtable.SK(): treatment names moved from row names to an
explicit Treatment column; added
print.xtable.SK() S3 method that strips the inconsistent
2-space indentation inserted by print.xtable in all data
rows except the first, which caused visible misalignment in compiled
LaTeX and HTML tables.man/ files revised: English corrected, two files
renamed (SPET.rd → SPET.Rd, LS.Rd
→ LSD.Rd), spurious \alias{SK.aov} removed,
and demo(package='SK') corrected to
demo(package='ScottKnott') in all documentation
examples.mtext call that was incorrectly placed outside
the scope of the axis1 argument.xtable.SK.Rd.LSmeans object, replaced
aux_mt$coef[,1] with
with(aux_mt, estimate).axis1 and axis2 to the
plot function, giving users greater flexibility to
customise their own axes.Version, Date, and
Description fields in the DESCRIPTION
file.formula, lm, and
lmerMod classes.SK.nest.aov.R: occurrences of
[:punct:] (incorrect) replaced with
[[:punct:]] (correct).SK.aov.R: line 44 contained a hard-coded
sig.level=0.05 that overrode user-supplied significance
levels.CITATION file; the package is now published
in a scientific journal.DESCRIPTION file.model.frame.aovlist method with calls to the generic, to
meet CRAN requirements.SK.nest.aovlist.R: occurrences of
[:punct:] (incorrect) replaced with
[[:punct:]] (correct).SPET (Split-plot in time).SK.nest.aov.R to make the study of interactions
easier.sorghum.SK.nest.aov and SK.nest.aovlist to
support the new notation.summary.SK.nest improved.SK and SK.nest have been
simplified.SK and SK.nest
objects improved.These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.