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Provides tools to identify and visualize branches in a phylogenetic tree that are significantly responsive to some intervention, taking as primary inputs a phylogenetic tree (of class phylo) and a data frame (or matrix) of corresponding tip (OTU) labels and p-values.
| Version: | 1.10.6 |
| Imports: | ape, phylobase, phyext2, RColorBrewer, phyloseq, graphics, utils, stats, MASS, vegan |
| Published: | 2017-10-02 |
| DOI: | 10.32614/CRAN.package.SigTree |
| Author: | John R. Stevens and Todd R. Jones |
| Maintainer: | John R. Stevens <john.r.stevens at usu.edu> |
| License: | GPL-3 |
| NeedsCompilation: | yes |
| Citation: | SigTree citation info |
| Materials: | NEWS |
| In views: | Phylogenetics |
| CRAN checks: | SigTree results |
| Reference manual: | SigTree.pdf |
| Vignettes: |
SigTree Tutorial Vignette |
| Package source: | SigTree_1.10.6.tar.gz |
| Windows binaries: | r-devel: SigTree_1.10.6.zip, r-release: SigTree_1.10.6.zip, r-oldrel: SigTree_1.10.6.zip |
| macOS binaries: | r-release (arm64): SigTree_1.10.6.tgz, r-oldrel (arm64): SigTree_1.10.6.tgz, r-release (x86_64): SigTree_1.10.6.tgz, r-oldrel (x86_64): SigTree_1.10.6.tgz |
| Old sources: | SigTree archive |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.