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Fixed issues with rhdf5 library that caused problems hosting SignacX on CRAN. Previously, SignacX looked to import an s3 method from rhdf5, which was changed to an importable method for saving hdf5 files.
Enabled SignacX to classify datasets >300,000 cells – fixed a memory allocation issue. First degree nearest KNN neighbors are now used for Shannon entropy calculation for datasets > 100,000 cells.
Fixed a typo in the help section for SignacX::MASC.
Addressed issues in the GitHub repository: Labeling of individual cell states corresponding to broad cell types.
Addressed issues in the GitHub repository: Integration with Seurat 4.0.0 clustering
First CRAN release.
CID.entropy CID.GetDistMat CID.IsUnique CID.LoadData CID.LoadEdges CID.Louvain CID.Normalize CID.smooth CID.writeJSON GenerateLabels Genes_Of_Interest GetModels_HPCA GetTrainingData_HPCA KSoftImpute MASC ModelGenerator SaveCountsToH5 Signac SignacBoot SignacFast
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.