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In the past decade, genome-scale metabolic reconstructions have widely been used to comprehend the systems biology of metabolic pathways within an organism. Different GSMs are constructed using various techniques that require distinct steps, but the input data, information conversion and software tools are neither concisely defined nor mathematically or programmatically formulated in a context-specific manner.The tool that quantitatively and qualitatively specifies each reconstruction steps and can generate a template list of reconstruction steps dynamically selected from a reconstruction step reservoir, constructed based on all available published papers.
| Version: | 0.1.3 |
| Depends: | R (≥ 3.5.0) |
| Imports: | ape, dplyr, ggplot2, ggtree, magrittr, methods, patchwork, plyr, RColorBrewer, rlang, SnowballC, stats, stringr, tm, utils |
| Published: | 2023-02-20 |
| DOI: | 10.32614/CRAN.package.Sysrecon |
| Author: | Shilin Ouyang [aut, cre], Zihao Li [aut], Jiamin Hu [aut], Miyuan Cao [aut], Feng Yu [aut], Longfei Mao [aut], RStudio [cph, fnd] |
| Maintainer: | Shilin Ouyang <ouyangshilin at hnu.edu.cn> |
| License: | GPL-3 |
| URL: | https://oyshilin.github.io/sysrecon/ |
| NeedsCompilation: | no |
| Materials: | README |
| CRAN checks: | Sysrecon results |
| Reference manual: | Sysrecon.pdf |
| Package source: | Sysrecon_0.1.3.tar.gz |
| Windows binaries: | r-devel: Sysrecon_0.1.3.zip, r-release: Sysrecon_0.1.3.zip, r-oldrel: Sysrecon_0.1.3.zip |
| macOS binaries: | r-release (arm64): Sysrecon_0.1.3.tgz, r-oldrel (arm64): Sysrecon_0.1.3.tgz, r-release (x86_64): Sysrecon_0.1.3.tgz, r-oldrel (x86_64): Sysrecon_0.1.3.tgz |
| Old sources: | Sysrecon archive |
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These binaries (installable software) and packages are in development.
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