The hardware and bandwidth for this mirror is donated by METANET, the Webhosting and Full Service-Cloud Provider.
If you wish to report a bug, or if you are interested in having us mirror your free-software or open-source project, please feel free to contact us at mirror[@]metanet.ch.
Simulation of reconstructed phylogenetic trees under tree-wide time-heterogeneous birth-death processes and estimation of diversification parameters under the same model. Speciation and extinction rates can be any function of time and mass-extinction events at specific times can be provided. Trees can be simulated either conditioned on the number of species, the time of the process, or both. Additionally, the likelihood equations are implemented for convenience and can be used for Maximum Likelihood (ML) estimation and Bayesian inference.
| Version: | 2.1.2 |
| Depends: | ape, coda, deSolve |
| Imports: | Rcpp (≥ 0.11.0), methods |
| LinkingTo: | Rcpp |
| Published: | 2022-04-25 |
| DOI: | 10.32614/CRAN.package.TESS |
| Author: | Sebastian Hoehna and Michael R. May |
| Maintainer: | Sebastian Hoehna <Sebastian.Hoehna at gmail.com> |
| License: | GPL-3 |
| NeedsCompilation: | yes |
| Citation: | TESS citation info |
| Materials: | NEWS |
| In views: | Phylogenetics |
| CRAN checks: | TESS results |
| Reference manual: | TESS.pdf |
| Vignettes: |
Bayesian_Diversification_Rate_Analysis |
| Package source: | TESS_2.1.2.tar.gz |
| Windows binaries: | r-devel: TESS_2.1.2.zip, r-release: TESS_2.1.2.zip, r-oldrel: TESS_2.1.2.zip |
| macOS binaries: | r-release (arm64): TESS_2.1.2.tgz, r-oldrel (arm64): TESS_2.1.2.tgz, r-release (x86_64): TESS_2.1.2.tgz, r-oldrel (x86_64): TESS_2.1.2.tgz |
| Old sources: | TESS archive |
| Reverse suggests: | nLTT |
Please use the canonical form https://CRAN.R-project.org/package=TESS to link to this page.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.