The hardware and bandwidth for this mirror is donated by METANET, the Webhosting and Full Service-Cloud Provider.
If you wish to report a bug, or if you are interested in having us mirror your free-software or open-source project, please feel free to contact us at mirror[@]metanet.ch.
In putative Transcription Factor Binding Sites (TFBSs) identification from sequence/alignments, we are interested in the significance of certain match score. TFMPvalue provides the accurate calculation of P-value with score threshold for Position Weight Matrices, or the score with given P-value. It is an interface to code originally made available by Helene Touzet and Jean-Stephane Varre, 2007, Algorithms Mol Biol:2, 15. <doi:10.1186/1748-7188-2-15>.
| Version: | 0.0.9 |
| Depends: | R (≥ 3.0.1) |
| Imports: | Rcpp (≥ 0.11.1) |
| LinkingTo: | Rcpp |
| Suggests: | testthat |
| Published: | 2022-10-21 |
| DOI: | 10.32614/CRAN.package.TFMPvalue |
| Author: | Ge Tan |
| Maintainer: | Ge Tan <ge_tan at live.com> |
| BugReports: | https://github.com/ge11232002/TFMPvalue/issues |
| License: | GPL-2 |
| Copyright: | 2007 LIFL-USTL-INRIA |
| URL: | https://github.com/ge11232002/TFMPvalue |
| NeedsCompilation: | yes |
| SystemRequirements: | C++11 |
| CRAN checks: | TFMPvalue results |
| Reference manual: | TFMPvalue.pdf |
| Package source: | TFMPvalue_0.0.9.tar.gz |
| Windows binaries: | r-devel: TFMPvalue_0.0.9.zip, r-release: TFMPvalue_0.0.9.zip, r-oldrel: TFMPvalue_0.0.9.zip |
| macOS binaries: | r-release (arm64): TFMPvalue_0.0.9.tgz, r-oldrel (arm64): TFMPvalue_0.0.9.tgz, r-release (x86_64): TFMPvalue_0.0.9.tgz, r-oldrel (x86_64): TFMPvalue_0.0.9.tgz |
| Old sources: | TFMPvalue archive |
| Reverse imports: | motifbreakR, TFBSTools, transite |
Please use the canonical form https://CRAN.R-project.org/package=TFMPvalue to link to this page.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.