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TFMPvalue: Efficient and Accurate P-Value Computation for Position Weight Matrices

In putative Transcription Factor Binding Sites (TFBSs) identification from sequence/alignments, we are interested in the significance of certain match score. TFMPvalue provides the accurate calculation of P-value with score threshold for Position Weight Matrices, or the score with given P-value. It is an interface to code originally made available by Helene Touzet and Jean-Stephane Varre, 2007, Algorithms Mol Biol:2, 15. <doi:10.1186/1748-7188-2-15>.

Version: 0.0.9
Depends: R (≥ 3.0.1)
Imports: Rcpp (≥ 0.11.1)
LinkingTo: Rcpp
Suggests: testthat
Published: 2022-10-21
DOI: 10.32614/CRAN.package.TFMPvalue
Author: Ge Tan
Maintainer: Ge Tan <ge_tan at live.com>
BugReports: https://github.com/ge11232002/TFMPvalue/issues
License: GPL-2
Copyright: 2007 LIFL-USTL-INRIA
URL: https://github.com/ge11232002/TFMPvalue
NeedsCompilation: yes
SystemRequirements: C++11
CRAN checks: TFMPvalue results

Documentation:

Reference manual: TFMPvalue.pdf

Downloads:

Package source: TFMPvalue_0.0.9.tar.gz
Windows binaries: r-devel: TFMPvalue_0.0.9.zip, r-release: TFMPvalue_0.0.9.zip, r-oldrel: TFMPvalue_0.0.9.zip
macOS binaries: r-release (arm64): TFMPvalue_0.0.9.tgz, r-oldrel (arm64): TFMPvalue_0.0.9.tgz, r-release (x86_64): TFMPvalue_0.0.9.tgz, r-oldrel (x86_64): TFMPvalue_0.0.9.tgz
Old sources: TFMPvalue archive

Reverse dependencies:

Reverse imports: motifbreakR, TFBSTools, transite

Linking:

Please use the canonical form https://CRAN.R-project.org/package=TFMPvalue to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.