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Fixed an issue with standardization. Variables with zero variance get turned into Inf. What we do instead is change the variance to Inf, and those variables become all 0 and are given zero coefficients. This problem can exhibit during CV.
Fixed the dense-matrix sp_tmul so that its serial
path honors n_threads. Its n_threads = 1
branch ran a raw Eigen product that ignored the requested thread count
and fell back to Eigen’s global default (all cores), inflating example
CPU time to user/elapsed ~10x with no wall-clock gain on a
many-core machine (the source of CRAN’s gcc-16 R-devel “CPU time >
2.5 times elapsed” NOTE). The inst/adelie submodule points
at the one-line fix on a forked branch
(bnaras/adelie@zero-variance). Investigation notes and a
Docker reprex live in debug/ (excluded from the package
tarball).
grpnet() and
cv.grpnet() triggered by inputs where the BASIL
kkt and screen checks disagreed by a 1-ULP gap
due to inconsistent multiplication ordering in the bundled
adelie_core solver. As a temporary workaround, the
inst/adelie submodule points at the fix on a forked branch
(bnaras/adelie@fix-kkt-ulp) until upstream pull request https://github.com/JamesYang007/adelie/pull/159 is
merged. A reprex and root-cause analysis live in
bug_reports/kkt_ulp/ (excluded from the package
tarball).IOSNPUnphased and
IOSNPPhasedAncestry classes.RStateMultiGlm64.NEWS.md file to track changes to the
package.These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.