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The following function arguments of
derive_var_afeye() are entering the next (and final) phase
of the deprecation process (#223):
dataset_occlat_vals{admiralophtha} have
been updated to use the {admiral} subject keys option
rather than explicitly quoting key variables such as
STUYDID and USUBJID. For instance, a line such
as by_vars = exprs(STUDYID, USUBJID) would be replaced by
by_vars = get_admiral_option("subject_keys") (#226).Removed analysis_value argument in the calls to
derive_param_computed() in ADBCVA template in line with the
deprecation of this argument in the new version of
{admiral}. Variable values for parameters of interest are
now all populated through the set_values_to argument
(#207).
Modified calls to derive_summary_records() in ADVFQ
template in line with the updates to this function in the new version of
the {admiral} package. The filter argument is
now renamed to filter_add, the argument
dataset_add is now always specified and the variable values
are now all populated through the set_values_to argument
(#204).
Added release date for {admiralophtha} 1.0 to the
front page (#203).
Removed analysis_value argument in the calls to
derive_param_computed() in ADBCVA vignette in line with the
deprecation of this argument in the new version of
{admiral}. Variable values for parameters of interest are
now all populated through the set_values_to argument
(#207).
Modified calls to derive_summary_records() in ADVFQ
vignette in line with the updates to this function in the new version of
the {admiral} package. The filter argument is
now renamed to filter_add, the argument
dataset_add is now always specified and the variable values
are now all populated through the set_values_to argument
(#204).
derive_var_afeye() was updated (#214):
xxLOC values were present in the input dataset.dataset_occ was deprecated in favor of
dataset, in line with {admiral}
conventions.lat_vals was deprecated. Laterality values
are now just expected to be “LEFT”, “RIGHT” or “BILATERAL”.Website now has button/links to Slack channel and GitHub Issues (#206).
Test coverage is now improved to 100% (#217).
Added a new parameter crit_var to
derive_var_bcvacritxfl() so that criterion flags can be
derived with respect to any variable. Also removed arguments
paramcds and basetype as their function can be
achieved using restrict_derivation() from
{admiral}. This also required renaming of argument
dataset_adbcva to dataset (#119).
Added AFEYE derivation and description to ADOE
Vignette (#165).
Updated ADBCVA template’s calls to use
restrict_derivation() in calls to
derive_var_bcvacritxfl() and also to showcase use of
crit_var argument of derive_var_bcvacritxfl()
(#119).
Switched out all references to admiral.test for
references to pharmaversesdtm in ADOE and ADBCVA templates,
and updated code to refer to oe_ophtha accordingly
(#184).
Switched out derive_var_merged_cat() for
derive_vars_merged() in the function
derive_var_studyeye() due to deprecation of the former in
favor of the latter in {admiral}(#119).
OECAT and OESCAT have been added to the
lookup tables in the ADOE and ADBCVA templates (#189).
Added a reference for the ETDRS to LogMAR conversion done by
convert_etdrs_to_logmar() and
convert_logmar_to_etdrs() (#136).
OECAT and OESCAT have been added to the
lookup tables in the ADOE and ADBCVA vignettes (#189).
All function and variable names on the website are in backquotes (#173).
admiralophtha_ex and
admiralophtha_qs from the package, as they now reside in
pharmaversesdtm, where they are now names
ex_ophtha and qs_ophtha respectively
(#184).loc_vals to function
derive_var_afeye() to allow users to specify values of
xxLOC for which AFEYE is derived (issue
#163).derive_var_afeye() to resolve bug when
STUDYEYE is ‘Bilateral’ (issue #134).lat_vals to function
derive_var_afeye() to allow users to specify values of
xxLAT for which AFEYE is derived, as well as
issuing warnings when unexpected values are found (issue #174).OESTRESU for
AVALU creation (issue #139).PARAM mapping to include units
where applicable (issue #139).DTYPE, VISIT,
VISITNUM, OEDY, OEDTC for derived
parameters in ADBCVA template (issue #137).AFEYE
(issue #133).{admiralophtha} website
(issue #127).STUDYEYE in
ADSL (issue #9).AFEYE in
Occurrence datasets (issue #10).{admiralophtha} package and accessible by calling
data(admiralophtha_ex) (issue #36).{admiral} package and accessible by
calling data(admiral_sc) or data(admiral_oe)
(issues #11 and #13).{admiral} to include
ophthalmology-specific variables and records, such as laterality
variables in AE and VFQ records in QS (issues #12 and #52).These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.