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The Automated and Early Detection of Seasonal Epidemic Onset and
Burden Levels (aedseo) package provides a powerful tool for
automating the early detection of seasonal epidemic onsets in time
series data. It offers the ability to estimate growth rates for
consecutive time intervals and calculate the Sum of Cases (SoC) within
those intervals. With use of a disease-specific threshold it also offers
the possibility to estimate seasonal onset of epidemics. Additionally it
offers the ability to estimate burden levels for seasons based on
historical data. It is aimed towards epidemiologists, public health
professionals, and researchers seeking to identify and respond to
seasonal epidemics in a timely fashion.
# Install aedseo from CRAN
install.packages("aedseo")You can install the development version of aedseo from
GitHub with:
# install.packages("devtools")
devtools::install_github("ssi-dk/aedseo")To quickly get started with aedseo, follow these
steps:
library(aedseo).tsd) from your data
using the to_time_series() function or
generate_seasonal_data() functions.combined_seasonal_output() function to get a
comprehensive seasonal analysis with seasonal onset and burden
levels.For a more detailed introduction to the workflow of this package, see
the Get Started vignette or run;
vignette("aedseo").
We welcome contributions to the aedseo package. Feel
free to open issues, submit pull requests, or provide feedback to help
us improve.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.