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Queries multiple resources authors HGNC (2019) <https://www.genenames.org>, authors limma (2015) <doi:10.1093/nar/gkv007> to find the correspondence between evolving nomenclature of human gene symbols, aliases, previous symbols or synonyms with stable, curated gene entrezID from NCBI database. This allows fast, accurate and up-to-date correspondence between human gene expression datasets from various date and platform (e.g: gene symbol: BRCA1 - ID: 672).
Version: | 0.1.2 |
Imports: | doParallel, limma, utils, org.Hs.eg.db, AnnotationDbi, parallel, foreach, readr, RCurl |
Suggests: | spelling |
Published: | 2021-02-15 |
DOI: | 10.32614/CRAN.package.aliases2entrez |
Author: | Raphael Bonnet [aut, cre] (Université Côte d’Azur), Lee Mariault [ctb] (Université Côte d’Azur), Jean-François Peyron [aut] (Inserm) |
Maintainer: | Raphael Bonnet <raphael.bonnet at univ-cotedazur.fr> |
BugReports: | https://github.com/peyronlab/aliases2entrez/issues |
License: | MIT + file LICENSE |
NeedsCompilation: | no |
Language: | en-US |
Materials: | NEWS |
In views: | Omics |
CRAN checks: | aliases2entrez results |
Reference manual: | aliases2entrez.pdf |
Package source: | aliases2entrez_0.1.2.tar.gz |
Windows binaries: | r-devel: aliases2entrez_0.1.2.zip, r-release: aliases2entrez_0.1.2.zip, r-oldrel: aliases2entrez_0.1.2.zip |
macOS binaries: | r-release (arm64): aliases2entrez_0.1.2.tgz, r-oldrel (arm64): aliases2entrez_0.1.2.tgz, r-release (x86_64): aliases2entrez_0.1.2.tgz, r-oldrel (x86_64): aliases2entrez_0.1.2.tgz |
Old sources: | aliases2entrez archive |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.