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Combination of results for meta-analysis using significance and effect size only. P-values and fold-change are combined to obtain a global significance on each metabolite. Produces a volcano plot summarising the relevant results from meta-analysis. Vote-counting reports for metabolites. And explore plot to detect discrepancies between studies at a first glance. Methodology is described in the Llambrich et al. (2021) <doi:10.1093/bioinformatics/btab591>.
Version: | 0.3.0 |
Depends: | R (≥ 4.1) |
Imports: | dplyr (≥ 1.0.0), ggplot2 (≥ 3.3.0), ggrepel (≥ 0.9.0), kableExtra (≥ 1.3.0), knitr (≥ 1.45), magrittr (≥ 1.5), methods (≥ 3.6.0), readr (≥ 1.0.0), readxl (≥ 1.0.0), rmarkdown (≥ 2.25), stats (≥ 3.6.0), tibble (≥ 3.0.0), tidyr (≥ 1.1.0), tidyverse (≥ 1.3.0), webchem (≥ 1.1.0) |
Suggests: | markdown, metaboliteIDmapping, testthat, vdiffr |
Published: | 2024-01-26 |
DOI: | 10.32614/CRAN.package.amanida |
Author: | Maria Llambrich [aut, cre], Eudald Correig [aut], Raquel Cumeras [aut] |
Maintainer: | Maria Llambrich <maria.llambrich at urv.cat> |
License: | GPL-3 |
URL: | https://github.com/mariallr/amanida |
NeedsCompilation: | no |
Materials: | README |
In views: | MetaAnalysis |
CRAN checks: | amanida results |
Reference manual: | amanida.pdf |
Vignettes: |
amanida_UserGuide |
Package source: | amanida_0.3.0.tar.gz |
Windows binaries: | r-devel: amanida_0.3.0.zip, r-release: amanida_0.3.0.zip, r-oldrel: amanida_0.3.0.zip |
macOS binaries: | r-release (arm64): amanida_0.3.0.tgz, r-oldrel (arm64): amanida_0.3.0.tgz, r-release (x86_64): amanida_0.3.0.tgz, r-oldrel (x86_64): amanida_0.3.0.tgz |
Old sources: | amanida archive |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.