Please cite PSCBS using one or more of the following references:

Olshen AB, Bengtsson H, Neuvial P, Spellman P, Olshen RA, Seshan VE (2011). “Parent-specific copy number in paired tumor-normal studies using circular binary segmentation.” Bioinformatics, 27(15). doi:10.1093/bioinformatics/btr329, https://doi.org/10.1093/bioinformatics/btr329.

Please cite PSCBS using one or more of the following references:

Bengtsson H, Neuvial P, Speed TP (2010). “TumorBoost: Normalization of allele-specific tumor copy numbers from a single pair of tumor-normal genotyping microarrays.” BMC Bioinformatics, 11(245). doi:10.1186/1471-2105-11-245, https://doi.org/10.1186/1471-2105-11-245.

Bengtsson H, Ray A, Spellman P, Speed TP (2009). “A single-sample method for normalizing and combining full-resolutioncopy numbers from multiple platforms, labs and analysis methods.” Bioinformatics, 25(7). doi:10.1093/bioinformatics/btp074, https://academic.oup.com/bioinformatics/article/25/7/861/210486.

Bengtsson H, Simpson K, Bullard J, Hansen K (2008). “aroma.affymetrix: A generic framework in R for analyzing small to very large Affymetrix data sets in bounded memory.” Technical Report 745, Department of Statistics, University of California, Berkeley.

Bengtsson H, Irizarry R, Carvalho B, Speed T (2008). “Estimation and assessment of raw copy numbers at the single locus level.” Bioinformatics, 24(6). https://academic.oup.com/bioinformatics/article/24/6/759/193223.

Corresponding BibTeX entries:

  @Article{,
    author = {Adam B. Olshen and Henrik Bengtsson and Pierre Neuvial
      and Paul Spellman and Richard A. Olshen and Venkatraman E.
      Seshan},
    title = {Parent-specific copy number in paired tumor-normal studies
      using circular binary segmentation},
    journal = {Bioinformatics},
    year = {2011},
    volume = {27},
    number = {15},
    doi = {10.1093/bioinformatics/btr329},
    url = {https://doi.org/10.1093/bioinformatics/btr329},
  }

  @Article{,
    author = {H. Bengtsson and Pierre Neuvial and Terence P Speed},
    title = {TumorBoost: Normalization of allele-specific tumor copy
      numbers from a single pair of tumor-normal genotyping
      microarrays},
    journal = {BMC Bioinformatics},
    year = {2010},
    month = {May},
    volume = {11},
    number = {245},
    doi = {10.1186/1471-2105-11-245},
    url = {https://doi.org/10.1186/1471-2105-11-245},
  }

  @Article{,
    author = {Henrik Bengtsson and Amrita Ray and Paul Spellman and
      Terence P Speed},
    title = {A single-sample method for normalizing and combining
      full-resolutioncopy numbers from multiple platforms, labs and
      analysis methods},
    journal = {Bioinformatics},
    year = {2009},
    volume = {25},
    number = {7},
    doi = {10.1093/bioinformatics/btp074},
    url =
      {https://academic.oup.com/bioinformatics/article/25/7/861/210486},
  }

  @TechReport{,
    author = {H. Bengtsson and K. Simpson and J. Bullard and K.
      Hansen},
    title = {{aroma.affymetrix}: A generic framework in {R} for
      analyzing small to very large {Affymetrix} data sets in bounded
      memory},
    institution = {Department of Statistics, University of California,
      Berkeley},
    year = {2008},
    month = {February},
    number = {745},
  }

  @Article{,
    author = {Henrik Bengtsson and R. Irizarry and B. Carvalho and T.P.
      Speed},
    title = {Estimation and assessment of raw copy numbers at the
      single locus level},
    journal = {Bioinformatics},
    year = {2008},
    volume = {24},
    number = {6},
    url =
      {https://academic.oup.com/bioinformatics/article/24/6/759/193223},
  }