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avidaR: A Computational Biologist’s Toolkit To Get Data From 'avidaDB'

Easy-to-use tools for performing complex queries on 'avidaDB', a semantic database that stores genomic and transcriptomic data of self-replicating computer programs (known as digital organisms) that mutate and evolve within a user-defined computational environment.

Version: 1.2.1
Depends: R (≥ 3.6.0)
Imports: base64enc (≥ 0.1-3), xml2 (≥ 1.3.2), httr (≥ 1.4.2), dplyr (≥ 1.0.6), readr (≥ 1.4.0), tidyr (≥ 1.1.2), tibble (≥ 3.0.6), circlize (≥ 0.4.11), RColorBrewer, R6, curl (≥ 5.0.2)
Suggests: testthat (≥ 3.0.0)
Published: 2024-06-21
DOI: 10.32614/CRAN.package.avidaR
Author: Miguel A. Fortuna ORCID iD [aut], Raúl Ortega ORCID iD [cre]
Maintainer: Raúl Ortega <raul.ortega at ebd.csic.es>
License: MIT + file LICENSE
URL: https://gitlab.com/fortunalab/avidaR
NeedsCompilation: no
Language: en-US
Materials: README NEWS
CRAN checks: avidaR results

Documentation:

Reference manual: avidaR.pdf

Downloads:

Package source: avidaR_1.2.1.tar.gz
Windows binaries: r-devel: avidaR_1.2.1.zip, r-release: avidaR_1.2.1.zip, r-oldrel: avidaR_1.2.1.zip
macOS binaries: r-release (arm64): avidaR_1.2.1.tgz, r-oldrel (arm64): avidaR_1.2.1.tgz, r-release (x86_64): avidaR_1.2.1.tgz, r-oldrel (x86_64): avidaR_1.2.1.tgz
Old sources: avidaR archive

Linking:

Please use the canonical form https://CRAN.R-project.org/package=avidaR to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.