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Implements functions that calculate upper prediction bounds on the false discovery proportion (FDP) in the list of discoveries returned by competition-based setups, implementing Ebadi et al. (2022) <doi:10.48550/arXiv.2302.11837>. Such setups include target-decoy competition (TDC) in computational mass spectrometry and the knockoff construction in linear regression (note this package typically uses the terminology of TDC). Included is the standardized (TDC-SB) and uniform (TDC-UB) bound on TDC's FDP, and the simultaneous standardized and uniform bands. Requires pre-computed Monte Carlo statistics available at <https://github.com/uni-Arya/fdpbandsdata>. This data can be downloaded by running the command 'devtools::install_github("uni-Arya/fdpbandsdata")' in R and restarting R after installation. The size of this data is roughly 81Mb.
Version: | 1.1.0 |
Suggests: | fdpbandsdata |
Published: | 2023-05-12 |
DOI: | 10.32614/CRAN.package.bandsfdp |
Author: | Arya Ebadi [aut, cre],
Dong Luo [aut],
Jack Freestone [aut],
William Stafford Noble [aut],
Uri Keich |
Maintainer: | Arya Ebadi <aeba3842 at uni.sydney.edu.au> |
BugReports: | https://github.com/uni-Arya/bandsfdp/issues |
License: | MIT + file LICENSE |
URL: | https://github.com/uni-Arya/bandsfdp |
NeedsCompilation: | no |
Materials: | README NEWS |
CRAN checks: | bandsfdp results |
Reference manual: | bandsfdp.pdf |
Package source: | bandsfdp_1.1.0.tar.gz |
Windows binaries: | r-devel: bandsfdp_1.1.0.zip, r-release: bandsfdp_1.1.0.zip, r-oldrel: bandsfdp_1.1.0.zip |
macOS binaries: | r-release (arm64): bandsfdp_1.1.0.tgz, r-oldrel (arm64): bandsfdp_1.1.0.tgz, r-release (x86_64): bandsfdp_1.1.0.tgz, r-oldrel (x86_64): bandsfdp_1.1.0.tgz |
Old sources: | bandsfdp archive |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.