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The main function biclust() provides several algorithms to find biclusters in two-dimensional data: Cheng and Church (2000, ISBN:1-57735-115-0), spectral (2003) <doi:10.1101/gr.648603>, plaid model (2005) <doi:10.1016/j.csda.2004.02.003>, xmotifs (2003) <doi:10.1142/9789812776303_0008> and bimax (2006) <doi:10.1093/bioinformatics/btl060>. In addition, the package provides methods for data preprocessing (normalization and discretisation), visualisation, and validation of bicluster solutions.
| Version: | 2.0.3.1 |
| Depends: | R (≥ 2.10), MASS, grid, colorspace, lattice |
| Imports: | methods, flexclust, additivityTests, tidyr, ggplot2 |
| Suggests: | isa2 |
| Published: | 2023-05-19 |
| DOI: | 10.32614/CRAN.package.biclust |
| Author: | Sebastian Kaiser, Rodrigo Santamaria, Tatsiana Khamiakova, Martin Sill, Roberto Theron, Luis Quintales, Friedrich Leisch, Ewoud De Troyer and Sami Leon. |
| Maintainer: | Sebastian Kaiser <dr.sebastian.kaiser at gmail.com> |
| License: | GPL-3 |
| NeedsCompilation: | yes |
| Materials: | NEWS |
| In views: | Cluster |
| CRAN checks: | biclust results |
| Reference manual: | biclust.pdf |
| Package source: | biclust_2.0.3.1.tar.gz |
| Windows binaries: | r-devel: biclust_2.0.3.1.zip, r-release: biclust_2.0.3.1.zip, r-oldrel: biclust_2.0.3.1.zip |
| macOS binaries: | r-release (arm64): biclust_2.0.3.1.tgz, r-oldrel (arm64): biclust_2.0.3.1.tgz, r-release (x86_64): biclust_2.0.3.1.tgz, r-oldrel (x86_64): biclust_2.0.3.1.tgz |
| Old sources: | biclust archive |
| Reverse depends: | iBBiG, QUBIC, RcmdrPlugin.BiclustGUI, runibic, s4vd, superbiclust |
| Reverse imports: | Anthropometry, BiBitR, biclustermd, FunCC, miRSM, mosbi, rqubic, sigQC |
| Reverse suggests: | BcDiag, isa2, rattle |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.