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biogram: N-Gram Analysis of Biological Sequences

Tools for extraction and analysis of various n-grams (k-mers) derived from biological sequences (proteins or nucleic acids). Contains QuiPT (quick permutation test) for fast feature-filtering of the n-gram data.

Version: 1.6.3
Depends: R (≥ 3.0.0), slam
Imports: combinat, entropy, partitions
Suggests: ggplot2, knitr, testthat
Published: 2020-03-31
DOI: 10.32614/CRAN.package.biogram
Author: Michal Burdukiewicz ORCID iD [cre, aut], Piotr Sobczyk [aut], Chris Lauber [aut], Dominik Rafacz [aut], Katarzyna Sidorczuk ORCID iD [ctb]
Maintainer: Michal Burdukiewicz <michalburdukiewicz at gmail.com>
BugReports: https://github.com/michbur/biogram/issues
License: GPL-3
URL: https://github.com/michbur/biogram
NeedsCompilation: no
Citation: biogram citation info
Materials: README ChangeLog
CRAN checks: biogram results

Documentation:

Reference manual: biogram.pdf
Vignettes: biogram package - an overview

Downloads:

Package source: biogram_1.6.3.tar.gz
Windows binaries: r-devel: biogram_1.6.3.zip, r-release: biogram_1.6.3.zip, r-oldrel: biogram_1.6.3.zip
macOS binaries: r-release (arm64): biogram_1.6.3.tgz, r-oldrel (arm64): biogram_1.6.3.tgz, r-release (x86_64): biogram_1.6.3.tgz, r-oldrel (x86_64): biogram_1.6.3.tgz
Old sources: biogram archive

Reverse dependencies:

Reverse imports: AmpGram, AmyloGram, CancerGram

Linking:

Please use the canonical form https://CRAN.R-project.org/package=biogram to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.