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Add arguments to write_fasta() to control line and
block lengths.
Fix warning message when a non-valid character is automatically replaced by X with AA.
On CRAN request, fix tags/attributes for HTML documentation.
Add support for fuzzy matching in
seq_detect_pattern() and
seq_crop_pattern().
Fixed missing output in seq_spellout() for
collapse = NULL.
getOption() instead of options() in
function arguments (Functions aliview,
seaview, print_sequences,
print.bioseq_dna, print.bioseq_rna and
print.bioseq_aa).Fix bug when importing fasta with > characters in sequence names.
Fix bug when exporting fasta (write_fasta) with NA
sequences.
On CRAN request, add a reference to Keck (2020) in description.
New logo.
Add CITATION file.
New system to disable colors in the console when printing
sequences using global options:
options(bioseq.color = "none").
New system to set GUI paths for seaview() and
aliview() using global options
(bioseq.seaview.exec and
bioseq.aliview.exec).
seq_extract_pattern,
seq_split_pattern, seq_split_kmer).seaview() and aliview()
was improved to explain the exec arguments.These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.