The hardware and bandwidth for this mirror is donated by METANET, the Webhosting and Full Service-Cloud Provider.
If you wish to report a bug, or if you are interested in having us mirror your free-software or open-source project, please feel free to contact us at mirror[@]metanet.ch.

canaper 1.0.1

DOCUMENTATION

Fix installation of dependencies when installing from r-universe repo (https://github.com/ropensci/canaper/commit/774d89f58af8c55dda178fff3d324b2e48b749fd)

Add warning for abundance data, since CANAPE analysis in canaper treats it the same as presence-absence data. Thanks to an anonymous reviewer for the suggestion (https://github.com/ropensci/canaper/commit/143cadee62a9bf3c5256e3d92240c6243bf803e4)

BUG FIXES

Fix internal functions count_higher() and count_lower() that did not distinguish between NA and NA_integer_. Thanks to @hadley (Hadley Wickham) (https://github.com/ropensci/canaper/commit/ff6012d6b817d3ba8765d8c8b009e2818da2ab9f)

OTHER

Remove tidyverse from vignettes and Suggests. Thanks to @hadley for pointing this out. (https://github.com/ropensci/canaper/commit/49aa94b418ad9e85f30e6f751651386674a367d8)

canaper 1.0.0

NEW FEATURES

• Add more palettes and pr_make_pal() to choose palettes (https://github.com/ropensci/canaper/commit/ec624d4c2e85051e4ee5c07143b407de96be7734)

• Add cpr_iter_sim() to help determine number of iterations needed for randomization algorithms (https://github.com/ropensci/canaper/commit/80a47782706816b8238c318ad596b9da47bfba76)

DOCUMENTATION

• Add logo (https://github.com/ropensci/canaper/commit/1d4232c4597a6ae3167f85afe3efb3d82e462bcd)

canaper 0.0.3

Includes improvements in response to review on ropensci (https://github.com/ropensci/software-review/issues/475)

DOCUMENTATION

• Update README with comparisons to other packages (https://github.com/ropensci/canaper/commit/d8aaf8de5193166d52ab890d8267090ea2f8ef6a)

• Add link to CONTRIBUTING.md to README (https://github.com/ropensci/canaper/commit/d8aaf8de5193166d52ab890d8267090ea2f8ef6a)

• Change Depends: R (>= 3.5.0) to Depends: R (>= 4.1.0) in DESCRIPTION (https://github.com/ropensci/canaper/commit/0f334965fb5a3fe5034eb1bc682b5051548eddb1)

• Add @KlausVigo as reviewer to DESCRIPTION (https://github.com/ropensci/canaper/commit/6e9b3d55202e2294a6436280ca6b01db13d92974)

BUG FIXES

• Delete redundant checks in internal functions (https://github.com/ropensci/canaper/commit/bccd0278dd3de5853680d9979ca26c1aa38a7fb3)

TESTS

• Make skipping of extended tests default (https://github.com/joelnitta/canaper/blob/76c277490dcecd0f32df351c48c8f8c891674aad/tests/testthat/test-cpr_rand_test.R#L395)

• Decrease number of replicates so tests finish faster (https://github.com/ropensci/canaper/commit/12bbe36bf5516a2a63c1235c76234708c4c5432d, https://github.com/ropensci/canaper/commit/f3af4671d679020aeaa97b1a038b3b5a96633f42)

OTHER

• Import functions from phyloregion instead of copying (https://github.com/ropensci/canaper/commit/7e8b24950912bfa2a5e10cf4dd9cfa8910d74e76)

canaper 0.0.2

BUG FIXES

• Fix bug where cpr_rand_test() was failing to return identical results after set.seed() when parallelization is on

canaper 0.0.1

NEW FEATURES

• Add cpr_rand_comm() function for generating a random community

• Implement user-provided community matrix randomization functions

BREAKING CHANGES

• Use vegan for community matrix randomizations instead of picante

BUG FIXES

• Fix error in classification of endemism types with cpr_classify_endem(), where super-endemic cells were previously being assigned if pe_obs_p_upper or pe_obs_alt_p_upper were highly significant (P > 0.99), to requiring both to be highly significant

• Fix calculation of RPD, RPE where alternative tree had all branch lengths converted to same value, to converting only non-zero branch lengths to same value

canaper 0.0.0.9000

NEW FEATURES

• Initial release on github

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.