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clusterhap: Clustering Genotypes in Haplotypes

One haplotype is a combination of SNP (Single Nucleotide Polymorphisms) within the QTL (Quantitative Trait Loci). clusterhap groups together all individuals of a population with the same haplotype. Each group contains individual with the same allele in each SNP, whether or not missing data. Thus, clusterhap groups individuals, that to be imputed, have a non-zero probability of having the same alleles in the entire sequence of SNP's. Moreover, clusterhap calculates such probability from relative frequencies.

Version: 0.1
Depends: R (≥ 2.10)
Imports: graphics, utils
Suggests: knitr, rmarkdown, testthat
Published: 2016-05-16
DOI: 10.32614/CRAN.package.clusterhap
Author: Gaston Quero and Sebastian Simondi , with contributions from Victoria Bonnecarrere and Lucia Gutierrez
Maintainer: Gaston Quero <gastonquero at gmail.com>
License: GPL-3
NeedsCompilation: no
CRAN checks: clusterhap results

Documentation:

Reference manual: clusterhap.pdf
Vignettes: Use clusterhap

Downloads:

Package source: clusterhap_0.1.tar.gz
Windows binaries: r-devel: clusterhap_0.1.zip, r-release: clusterhap_0.1.zip, r-oldrel: clusterhap_0.1.zip
macOS binaries: r-release (arm64): clusterhap_0.1.tgz, r-oldrel (arm64): clusterhap_0.1.tgz, r-release (x86_64): clusterhap_0.1.tgz, r-oldrel (x86_64): clusterhap_0.1.tgz

Linking:

Please use the canonical form https://CRAN.R-project.org/package=clusterhap to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.