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cubar

CRAN status Lifecycle: experimental DOI

Overview

cubar is a package for codon usage bias analysis in R. Main features are as follows:

Main advantages of cubar are as follows: - Process large datasets (>10,0000 sequences) efficiently using the Biostrings and data.table backends; - Support genetic codes cataloged by NCBI as well as custom ones; - Integrate with other data analysis or bioinformatic packages in the R ecosystem;

Dependencies

Depends

Imports

Installation

The latest release of cubar can be installed with:

install.packages("cubar")

The latest developmental version of cubar can be installed with:

devtools::install_github("mt1022/cubar", dependencies = TRUE)

Usage

Documentation can be found within R (by typing ?function_name). The following tutorials are available from our website:

Getting help

Please use GitHub issues for bug reports, questions, and feature requests.

Suggests

Acknowledgements

GitHub Copilot was used to suggest code snippets in the development of this package. Thanks the GitHub Education teacher program for providing free access to GitHub Copilot.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.