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deeptime 2.0.0
deeptime now requires ggplot2 version 3.5.0 or
higher.
This new major version of deeptime includes several new features:
- Added FGDC/USGS geologic patterns to internal data (#52)
- Added functions to retrieve and plot FGDC/USGS geologic patterns
(#52)
- Added functions to use FGDC/USGS patterns as ggplot2 fills or with
the
ggpattern
package (see new vignette) (#52)
- Added the
true_colors
option to get_scale_data(),
which, when set to FALSE
, can be used to retrieve the
custom Macrostrat colors that were previously in the built-in datasets
(#62)
- Updated built-in timescales to 2023/06 version of GTS
- Added option to
coord_geo()
to abbreviate interval
labels based on only the intervals that are being plotted (#64)
- Added
guide_geo()
as an alternative to
coord_geo()
, mostly for use with radial plots (#53)
Bug fixes:
- Fixed the built-in timescale datasets to have true CGMP colors for
the Precambrian (#62)
Notable changes:
- The
phytools
package is no longer required to install
deeptime
but is required to use the
geom_phylomorphospace()
function
- The
geomtextpath
package is no longer required to
install deeptime
but is required to add labels with the
coord_geo_polar()
or coord_geo_radial()
functions
- The
gggeo_scale_old()
function has been fully
deprecated
deeptime 1.1.1
deeptime now requires rlang version 1.1.0 or higher. This patch
version includes several bug fixes:
- Fixed several cases where vignette and documentation building and/or
unit testing would fail when the Macrostrat API was down
- Fixed coord_geo_polar() and coord_geo_radial() when the r-axis has
expansion (#60)
- Improved argument type checking and error handling across the entire
package
deeptime 1.1.0
deeptime now requires ggplot2 version 3.4.0 or higher. This version
introduces several new features and bug fixes:
- Added geom_points_range(), a function designed for visualizing
temporal occurrence data
- Added facet_grid_color() and facet_wrap_color() for changing strip
background colors (#50)
- Added coord_geo_radial(), an enhanced version of coord_geo_polar()
(only works with ggplot2 version 3.5.0 and higher) (#56)
- Added
family
and fontface
arguments to
coord_geo()
- Added the ability to include interval labels with coord_geo_polar()
(#48)
- Fixed the interaction between coord_geo() and ggsave() (#49)
- Fixed
size = "auto"
when
center_end_labels = TRUE
in coord_geo()
- Updated several functions to work with ggplot2 version 3.5.0
Notable changes:
- The names for the theme elements that are used for coord_geo_polar()
are now prepended with “deeptime.” (e.g.,
deeptime.axis.line.r
) (#51)
- ggplot2 version 3.5.0 has broken several edge cases of
coord_trans_xy(). See the documentation for more details. This will be
fixed in a future deeptime release.
deeptime 1.0.1
- Fixed the bounds of the Kungurian stage in the built-in stages
data
- Updated License to GPL >= 3
- Changed tidyverse to dplyr and magrittr in Suggests and
vignettes
deeptime 1.0.0
- Updated built-in timescales to 2022/10 version of GTS
- Added a geom for making phylomorphospaces
- Added vignettes
- Renamed getScaleData() to get_scale_data()
- Soft deprecated gggeo_scale() and gggeo_scale_old()
deeptime 0.3.0
deeptime now requires ggplot2 version 3.3.0 or higher. Several new
features and fixed compatibility with various ggplot2 versions.
- Added coord_geo_polar(), for adding timescales to polar plots
(#33)
- Added color and fill discrete scales that use the GTS colors
(#43)
- Fixed coord_geo_polar() and coord_trans_xy() for ggplot2 version
3.4.0 (#44)
- Fixed coord_geo() for ggplot2 version 3.4.0
- Added tests for both ggplot2 version 3.3.6 and 3.4.0
- Removed uses of getFromNamespace (#45)
deeptime 0.2.3
- Updated built-in timescales to 2022/02 version of GTS
- Better name handling and documentation for getScaleData() (#42)
deeptime 0.2.2
- Skip tests when suggested packages are unavailable
- Added the ability to specify label color (#40)
deeptime 0.2.1
Updated built-in timescales
- Updated the built-in timescales using the Macrostrat API (#39)
- Fixed CRAN checks when ggtree is missing (#38)
deeptime 0.2.0
Several new features and bug fixes.
- coord_geo() now works with discrete axes (#32 and #35)
- Fixed a bug that prevented the use of custom interval data
- Added option to use ggfittext to automatically resize labels
(#19)
- Added coord_trans_flip() (#20)
- Fixed axis labels for coord_trans_xy() (#36)
- Added tests with testthat (#34)
deeptime 0.1.0
First minor release (released on CRAN!)
- Fixed ability to use text transformations (from
scales
)
in coord_geo()
(#30)
- Added automatic R CMD check Github Actions
- Fixed S3 method consistency and other R CMD check warnings and
notes
- Fixed
coord_geo()
when axis breaks were reversed or
NULL (#23 and #29)
- Added packages from examples and README to
Suggests
deeptime 0.0.6
Several bug fixes and minor features.
- Added ability to specify a layout for
ggarrange2()
(#21)
- Added ability to center labels for time intervals that are broken by
axis limits (#18)
- Fixed
gggeo_scale()
for ggplot2
>=3.3.0
(#22)
- Replaced README examples with examples using real data (#28)
- Fixed using first letters for the
pos
argument
- Fixed label order (#26)
- Switched from Travis to Github Actions (#27)
- Fixed handling of axis tick labels for coord_trans_xy (#31)
deeptime 0.0.5
Added coord_geo()
, which is a coordinate system for
ggplot2
that allows for adding highly customized timescales
to ggplot
objects. Both gggeo_scale()
and
gggeo_scale_old
are preserved but will receive notably less
maintenance moving forward.
- Updated examples and documentation to use
coord_geo()
- Added
coord_trans_xy()
, which is a coordinate system
for ggplot2
that is similar to coord_trans()
but allows for 2-dimensional transformations
- Added
disparity_through_time()
which allows for
plotting 2-dimensional data across a 3rd dimension (using
lattice
)
deeptime 0.0.4
ggarrange2()
now accepts geo_scale
objects
and other grobified ggplots
- Fixed missing axes and axis titles
deeptime 0.0.3
Minor release for bug fixes
- Added options to customize borders and line width
- Fixed abbreviations for stages named “Series X” (#9)
- Fixed scale when x-axis crosses 0 (#10, #12)
- Preserve margins of original plots (#13)
- Fixed scale for plots with multiple panels
deeptime 0.0.2
Complete redesign of gggeo_scale()
that adds the scale
outside of the plotting space using gtable
. The old version
of gggeo_scale()
is preserved as
gggeo_scale_old()
.
- Can now pull timescales from the Macrostrat API (#8)
deeptime 0.0.1
First full release. Adds scale onto the bottom of a ggplot.
- Depends on R>3.4 (#1)
- Fixed adding scales to faceted plots (#2)
- Added timescale data from PBDB API (#3)
- Fixed the use of ggtree when a geom has its own data (#5)
- Fixed the stacking of multiple scales (#6)
- Fixed documentation spelling (#7)
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.