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dendroNetwork: news
dendroNetwork 0.5.5
New features
Minor improvements
- dendronetwork: it is now possible to choose which correlation to use
for creating network(s): using the correlation after the Hollstein(1980)
transformation r_hol or the correlation without any transformation (r).
The default is now r_hol.
Bug Fixes
Deprecated and defunct
Documentation fixes
Continuous integration
dendroNetwork: news
dendroNetwork 0.5.4
New features
Minor improvements
Bug Fixes
Deprecated and defunct
Documentation fixes
Continuous integration
dendroNetwork 0.5.3
(05-04-2024)
New features
Minor improvements
Bug Fixes
Deprecated and defunct
Documentation fixes
- added descriptions of Cytoscape in the readme and vignettes
- added vignette: dendrochronological_data which describes the data to
be used.
- minor corrections
Continuous integration
dendroNetwork 0.5.2
(29-03-2024)
New features
Minor improvements
- added a CONTRIBUTING.md file for contribution guidelines
- added check to determine if input graph is an igraph object for all
functions that need an igraph as input
- added check to determine if input tree-ring dataset is rwl object
for
sim_table
Bug Fixes
- corrected bug in
cyto_clean_styles()
- corrected error in
wuchwerte()
. It is not using the
anos1
dataset from dplR anymore
- corrected error in
cyto_create_gn_style
and
cyto_create_cpm_style
- updated
cyto_create_cpm_style
because it was not
working properly.
Deprecated and defunct
- dev-folder removed, since this was not needed (created by
biocthis
)
Documentation fixes
- update acknowledgements in readme and paper
- corrected text of documentation in cor_mat_overlap()
- added pkgdown site: https://ronaldvisser.github.io/dendroNetwork/
- moved some images to man/figures
- added Vignette on Cytoscape use
- moved information for using big dataset to separate vignette
- updated README: added more installation instructions
- corrected examples in
cyto_create_gn_style
and
cyto_create_cpm_style
Continuous integration
dendroNetwork 0.5.1
(10-02-2024)
New features
Minor improvements
- replaced igraph::graph.data.frame() with
igraph::graph_from_data_frame(), since the former is deprecated in
igraph 2.0.0
- replaced
igraph::is.simple
with
igraph::is_simple
- replaced
igraph::decompose.graph
with
igraph::decompose
- correction to calls to functions
grDevices::colorRampPalette
and
stats::pnorm
Bug Fixes
Deprecated and defunct
Documentation fixes
- minor corrections to README
- added codemeta.json using codemetar::write_codemeta()
- added .github/CONTRIBUTING.md using
usethis::use_tidy_contributing()
- DESCRIPTION: added URL and BugReports to DESCRIPTION + package
checks
- correction in clique_community_names(_par) functions, due to [k]
seen as link
- added to cytoscape functions
Continuous integration
dendroNetwork 0.5.0
(08-02-2024)
New features
First public release
Minor improvements
Bug Fixes
Deprecated and defunct
Documentation fixes
Continuous integration
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.