The hardware and bandwidth for this mirror is donated by METANET, the Webhosting and Full Service-Cloud Provider.
If you wish to report a bug, or if you are interested in having us mirror your free-software or open-source project, please feel free to contact us at mirror[@]metanet.ch.
The dfped R package provides an unified method for designing and analysing dose-finding trials in paediatrics, while bridging information from adults.
dfped package includes three extrapolation methods in order to calculate the dose range: linear, allometry and maturation adjustment, using pharmacokinetic (PK) data. To do this, it is assumed that target exposures are the same in both populations. The working model and prior distribution parameters of the dose-toxicity and dose-efficacy relationships can be obtained using early phase adult toxicity and efficacy data at several dose levels through dfped package. Priors are used into the dose finding process through a Bayesian model selection or adaptive priors, to facilitate adjusting the amount of prior information to differences between adults and children. This calibrates the model to adjust for misspecification if the adult and paediatric data are very different. User can use his/her own Bayesian model written in Stan code through the dfped package. A template of this model is proposed in the examples of the corresponding R functions in the package. Finally, in this package you can find a simulation function for one trial or for more than one trial.
A latest version of the package dfped is available on CRAN and can be loaded via
install.packages("dfped")
library(dfped)To install the dfped package from GitHub, first make sure that you can install the rstan package and C++ toolchain by following these instructions. The program Rtools (available on https://cran.r-project.org/bin/windows/Rtools/) comes with a C++ compiler for Windows. On OS-X, you should install Xcode. Once rstan is successfully installed, you can install dfped from GitHub using the devtools package by executing the following in R:
if (!require(devtools)){
install.packages("devtools")
library(devtools)
}
install_github("artemis-toumazi/dfped")If installation fails, please let us know by filing an issue.
Details on formula syntax, families and link functions, as well as
prior distributions can be found on the help page of the dfped function:
{r help.dfped, eval=FALSE} help(dfped)
Unfortunately, fitting your Stan model with dfped, there is currently no way to avoid the compilation.
You can either open an issue on github or write me an email to (artemis.toumazi@gmail.com).
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.