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eDNAjoint 0.3

User-facing changes

• Changed function names to snakemake (i.e., jointModel() to joint_model())
• Changed function arguments to snakemake (i.e., n.chain to n_chain)
• Changed input data names to snakemake (i.e., qPCR.N to pcr_n)
• Changed MCMC sampling arguments so the n_iter includes all MCMC iterations, including the number of warm-up iterations specified in n_warmup. Changed default values accordingly.

Non-user facing changes

• Collapsed Stan files with more conditional statements to accommodate more model variations within one file
• Added Stan helper functions
• Moved joint_model and traditional_model helper functions to new files
• Linted package to match default lintr style
• Updated compilation flags to allow installation from source on Windows RStudio

eDNAjoint 0.2

• Package source code now hosted at https://github.com/ropensci/eDNAjoint
• Improved programming (i.e., reduced cyclomatic complexity, spacing, etc.)
• Added functionality to accommodate semi-paired data (i.e., traditional samples not collected at all surveyed sites).
• Improved integration of package print statements with user guide.
• Updated default calculation of initial values for MCMC.

eDNAjoint 0.1

• Initial version of the package on GitHub.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.