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earlyR 0.0.4

New features

• graphs are now using ggplot2

earlyR 0.0.3

Bug fixes

• fix issue #11 where the likelihood surface was incorrectly calculated. This unfortunately reverts the issue from #4

earlyR 0.0.2

New features

• heat colors in the plot of lambdas have been replaced by a constant color

Bug fixes

• fixed issue 4 relating to low log-likelihood values which resulted in constant zeros when reverted back to the likelihood scale

earlyR 0.0.1

The main features of the package include:

• get_R: a function to estimate R as well as the force of infection over time, from incidence data; output is an object of class earlyR

• sample_R: a function to obtain a sample of likely R values

• plot: a function to visualise earlyR objects (R or force of infection).

• points: a function using earlyR objects to add the force of infection to an existing plot.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.