The hardware and bandwidth for this mirror is donated by METANET, the Webhosting and Full Service-Cloud Provider.
If you wish to report a bug, or if you are interested in having us mirror your free-software or open-source project, please feel free to contact us at mirror[@]metanet.ch.

fido 1.1.1

• Fixing a minor bug in the configure script

fido 1.1.0

• Updating the basset model to allow for additive Gaussian processes.
• Updating the random seed generation.
• Removed maltipoo as an export. There were a few small changes to names of internal maltipoo functions (e.g., “verify.maltipoo” became “verify_maltipoo”).
• Updating the configure script to a compile but that occured when OpenMP is present but R is not configured to use it.
• Fixed a few small bugs (predicting with one sample; wrong constant; etc.).

fido 1.0.4

• changing default optimizer (lbfgs rather than adam), adam is more sensitive to random seed
• adding new r2 methods for calculating Bayesian R2 for pibble and basset models
• predict.bassetfit now accepts a newdata=NULL argument to predict on training set

bug fixes

• fixing a few discrepancies with base R commands (print, summary, etc).

fido 1.0.3

bug fixes

• Updating documentation under the newest version of R (4.2.1)

fido 1.0.2

bug fixes

• Removing a timing test because it is irrelevant and can fail under certain set-ups.

fido 1.0.1

bug fixes

• Changing phyloseq from imports to depends, was causing issues installing from CRAN.
• Fixing bug in configure.ac that was causing openmp parallelization to not work on some machines.

fido 1.0.0

More changes to make the final push for CRAN! Changes include:

• Updating the description file to match CRAN’s standards
• Removing the dependency to driver
• Linking the one remote package (MicrobeDS) to a separate CRAN-like Github repo using the “drat” package. This is to match CRAN’s policy against no use of “Remotes”.
• Precomputing the longer running vignettes, cutting R CMD check times in half. The original vignettes can be found in the vignettes folder with a “.orig” extension for reproducibility.

fido 0.1.14

• More changes to prepare for version 0.2 (and CRAN soon), including:
• Lots of cleaning of small warnings and notes
• Fixing erorrs with the base plot function
• Cleaning up some manual entries
• Fixing the errors posted on Github (to_ilr among others)

fido 0.1.13

• tons of tiny changes to prepare for version 0.2 (and ultimately CRAN) featured changes include:
• plot and coef methods for *fit objects now abide by CRAN generic naming scheme - may cause some problems if prior code had positional arguments to these functions
• now being tested using travis integration (vignettes not tested there due to time constraints)
• merged Kim’s fixes to maltipoo code (will almost certainly change maltipoo results; there had been a bug in prior versions)
• Internally stored mallard and mallard_family data now import as mallard and mallard_family rather than both importing as ps. Solved a R CMD CHECK warning.
• Lots of tiny updates to documentation

fido 0.1.12

• orthus added for jointly fitting multinomial and gaussian data (e.g., 16S microbiome and metabolomics data)

fido 0.1.11

• Kim fixed windows installation problems (Thanks Kim!)
• Fixed bug in predict that was effecting ppc
• Fixed error when pars!=NULL in summary
• lambda_to_iqlr now had default behavior when focus.cov=NULL
• Fixed issue with Xi=NULL in pibblefit when trying to transform
• small changes to make pibble wrapper around c++ functions faster

fido 0.1.10

• basset added for fitting non-linear regression using fido
• numerous changes to make installation easier
• Added a NEWS.md file to track changes to the package.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.