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genevintage 0.1.3

• Added transcript2gene() to map Ensembl/GENCODE transcript identifiers to gene ids or names
• Added aggregate_transcripts() to sum a transcript-level matrix to gene level
• detect_species() and detect_release() accept transcript identifiers
• Add support for gene_lengths()/stream_exon_lengths() to fetch exon-union gene lengths
• Added stream_homologies() to read older Compara dumps that have no is_high_confidence column; high_confidence is then NA.
• entrez_ids() no longer fails on identifiers dated before release 85, which has no cross-reference files

genevintage 0.1.2

• geneid2name() and correct_genenames() (renamed from correct_names()) also accept a matrix, sparse matrix or data frame, replacing row names in place instead of returning a vector.
• Every exported function also has a PascalCase alias (GeneID2Name(), MitoGenes(), CorrectGeneNames(), and so on).
• Add functions to infer build from gene names

genevintage 0.1.1

• detect_species_names() infers species and annotation build from gene symbols alone, no identifiers needed, using an index from build_symbol_index().
• Index human GENCODE 17-19 on GRCh37.

genevintage 0.1.0

First release.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.