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Changes:
Removed raster::raster() dependency
Added new rasterise_matrix() function to do rasterisation
Changed convert_input_seq_to_sequence_list() behaviour:
Bug fixes:
Fixed critical error with plot matching lenience on some local linux systems that resulted in tests failing
Inserted additional padding blank lines above/below with index annotation vertical position > 1 to avoid plot dimensions breaking
Known issues remaining:
Related to ggplot v4.0.0:
Pixel rendering changes means rectangles sometimes fail to render in visualise_methylation_colour_scale(), resulting in the appearance of vertical white lines. This depends on the precision and exact export size.
There is a faint line around the panel area with non-white backgrounds.
Documented that debug_join_vector functions do not return a value
Changed some reference images to account for ggplot updating to v4.0.0
Initial CRAN submission
Initial functionality:
Visualise single DNA sequences, multiple DNA sequences, and DNA modification (e.g. methylation).
Read and write FASTQ, including modified FASTQ produced with -T MM,ML that stores modification information in the header rows.
Intelligently merge with metadata including read direction, and reverse all information for reverse reads only to make all reads “forward” versions.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.