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This short article covers the two helper functions that prepare data before the plot is drawn.
as_forest_data() to standardize a coefficient
tableas_forest_data() converts your column names into the
internal structure used by ggforestplotR. The result
contains the columns expected by ggforestplot(),
add_forest_table(), and add_split_table().
raw_coefs <- data.frame(
variable = c("Age", "BMI", "Treatment"),
beta = c(0.10, -0.08, 0.34),
lower = c(0.02, -0.16, 0.12),
upper = c(0.18, 0.00, 0.56),
display = c("Age", "BMI", "Treatment"),
section = c("Clinical", "Clinical", "Treatment"),
sample_size = c(120, 115, 98),
p_value = c(0.04, 0.15, 0.001)
)
forest_ready <- as_forest_data(
data = raw_coefs,
term = "variable",
estimate = "beta",
conf.low = "lower",
conf.high = "upper",
label = "display",
grouping = "section",
n = "sample_size",
p.value = "p_value"
)Once the data are standardized, you can pass them straight into
ggforestplot().
tidy_forest_model() for model objectsIf broom is available, tidy_forest_model()
can pull coefficient estimates and confidence limits from a fitted
model.
The returned object can be passed directly into
ggforestplot().
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.