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ggmugs

R-CMD-check

The goal of ggmugs is to visualize multiple Genome-wide Association Study (GWAS) summary statistics

Installation

To install the ggmugs package, run:

if(!require("devtools")){
  install.packages("devtools")
  library("devtools")
}

devtools::install_github("Broccolito/ggmugs")

Example

This is a basic example which shows you how to solve a common problem:

library(ggmugs)

plt = ggmugs(
  study_name = c("sumstat1", "sumstat2", "sumstat3", "sumstat4", "sumstat5"),
  summary_stat = c("https://raw.githubusercontent.com/Broccolito/ggmugs_data/main/sumstat1.txt",
                   "https://raw.githubusercontent.com/Broccolito/ggmugs_data/main/sumstat2.txt",
                   "https://raw.githubusercontent.com/Broccolito/ggmugs_data/main/sumstat3.txt",
                   "https://raw.githubusercontent.com/Broccolito/ggmugs_data/main/sumstat4.txt",
                   "https://raw.githubusercontent.com/Broccolito/ggmugs_data/main/sumstat5.txt"),
  p1 = 1e-4,
  p2 = 1e-6,
  p3 = 1e-8,
  color1 = "#FFFFE0",
  color2 = "#FFC300",
  color3 = "#FF5733"
)

Here is an example output from the function:

Example Output
Example Output

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.