The hardware and bandwidth for this mirror is donated by METANET, the Webhosting and Full Service-Cloud Provider.
If you wish to report a bug, or if you are interested in having us mirror your free-software or open-source project, please feel free to contact us at mirror[@]metanet.ch.

ggrasp: Gaussian-Based Genome Representative Selector with Prioritization

Given a group of genomes and their relationship with each other, the package clusters the genomes and selects the most representative members of each cluster. Additional data can be provided to the prioritize certain genomes. The results can be printed out as a list or a new phylogeny with graphs of the trees and distance distributions also available. For detailed introduction see: Thomas H Clarke, Lauren M Brinkac, Granger Sutton, and Derrick E Fouts (2018), GGRaSP: a R-package for selecting representative genomes using Gaussian mixture models, Bioinformatics, bty300, <doi:10.1093/bioinformatics/bty300>.

Version: 1.2
Depends: R (≥ 3.1.0)
Imports: ggplot2, mixtools, ape, bgmm, colorspace, methods
Published: 2022-04-21
DOI: 10.32614/CRAN.package.ggrasp
Author: Thomas Clarke [aut, cre]
Maintainer: Thomas Clarke <tclarke at jcvi.org>
License: GPL-2
NeedsCompilation: no
Citation: ggrasp citation info
Materials: README NEWS
CRAN checks: ggrasp results

Documentation:

Reference manual: ggrasp.pdf

Downloads:

Package source: ggrasp_1.2.tar.gz
Windows binaries: r-devel: ggrasp_1.2.zip, r-release: ggrasp_1.2.zip, r-oldrel: ggrasp_1.2.zip
macOS binaries: r-release (arm64): ggrasp_1.2.tgz, r-oldrel (arm64): ggrasp_1.2.tgz, r-release (x86_64): ggrasp_1.2.tgz, r-oldrel (x86_64): ggrasp_1.2.tgz
Old sources: ggrasp archive

Linking:

Please use the canonical form https://CRAN.R-project.org/package=ggrasp to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.