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The official release of the package is available at CRAN: https://CRAN.R-project.org/package=ggroups
This repository contains official and development releases. To check whether the latest official and the latest development versions are different, please notice the badges on top of the page for the official (CRAN) and development (release) versions.
To get the current released version from CRAN:
install.packages("ggroups")To get the current development version from GitHub:
# install.packages("devtools")
devtools::install_github('nilforooshan/ggroups')This package contains pedigree processing and analyzing functions, including functions for checking, extraction and renumbering the pedigree, making the additive and dominance pedigree relationship matrices and their inverses, in matrix and tabular formats, calculating inbreeding coefficients (Meuwissen & Luo, 1992), as well as functions related to genetic groups.
First, it is recommended to check the pedigree
data.frame with the pedcheck function.
Pedigree relationship matrix and its inverse are fundamentals in the
conventional and modern animal breeding. The concept of genetic groups
stems from the fact that not all the unknown parents are of the same
genetic level. The genetic group contribution matrix
(Q) is required to weight and add genetic group effects
(ĝ) to the genetic merit of animals
(û), which is equal to Qĝ +
û (Quaas,
1988). Calculating Q is computationally
challenging, and for large pedigree, large RAM and long computational
time is required. Therefore, the functions qmatL and its
parallel version, qmatXL are introduced. Overlap between
sire and dam genetic groups is supported.
Thanks
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.