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glyparse 0.5.3

Minor improvements and fixes

• Prepare for release on CRAN.

glyparse 0.5.2

Minor improvements and fixes

• glyaprse now depends on the CRAN version of glyrepr.

glyparse 0.5.1

Minor improvements and fixes

• parse_iupac_extended() and parse_iupac_short() now support generic monosaccharides, e.g. “Hex”, “HexNAc”, “HexN”.

glyparse 0.5.0

New features

• Add parse_linear_code() to parse Linear Code strings.
• auto_parse() now supports Linear Code strings.

Minor improvements and fixes

• Revise the documentations of all parsers to be more accurate about return value type.

glyparse 0.4.5

Minor improvements and fixes

• Fix the bug that linkages like “1→3/4” cannot be parsed by parse_iupac_extended().
• Fix the bug that linkages like “b1-a3|a4” cannot be parsed by parse_wurcs().
• Fix the bug that linkages like “a3/4” cannot be parsed by parse_iupac_short().
• Fix the bug that linkages like “3:3o(3|6+1)4d” cannot be parsed by parse_glycoct().

glyparse 0.4.4

Minor improvements and bug fixes

• Update dependencies to depend on release versions of glycoverse packages.

glyparse 0.4.3

Minor improvements and fixes

• Fix bugs introduced by the breaking changes in glyrepr v0.7.0.

glyparse 0.4.2

Minor improvements and fixes

• Fix some incorrect structure strings in vignettes.

glyparse 0.4.1

Minor improvements and fixes

• Fix some incorrect structure strings in tests and documentations.
• Remove some legacy documentations.

glyparse 0.4.0

Breaking changes

• parse_iupac_condensed() and parse_iupac_short() now require the reducing-end monosaccharide to have anomer information. For example, “Neu5Ac(a2-” and “Neu5Aca-” are valid, but “Neu5Ac” is not.

glyparse 0.3.1

Minor improvements and fixes

• parse_pglyco_struc() now support “aH” and “pH” monosaccharides.

glyparse 0.3.0

New features

• Add auto_parse() to automatically detect and parse different glycan structure string formats.

Minor improvements and fixes

• Better error messages. Before:

  > parse_iupac_condensed("bad_glycan")

  Error in `purrr::map()` at glyparse/R/struc-parser-wrapper.R:13:3:
  ℹ In index: 1.
  Caused by error in `value[[3L]]()`:
  ! Could not parse IUPAC-condensed string: {.val {x}}
  ℹ Invalid characters or format in IUPAC-condensed string
  Run `rlang::last_trace()` to see where the error occurred.

  Now:

  > parse_iupac_condensed("bad_glycan")

  Error in `parse_iupac_condensed()`:
  ! Can't parse: "bad_glycan"
  Run `rlang::last_trace()` to see where the error occurred.

glyparse 0.2.1

Minor improvements and fixes

• Update README.
• A “Get Started” vignette is added.

glyparse 0.2.0

Major improvements

• Add parse_glycoct() to parse glycans in GlycoCT format.

glyparse 0.1.2

Minor improvements

• parse_iupac_short(), parse_iupac_extended(), parse_iupac_condensed(), parse_wurcs() now support multiple substituents on the same monosaccharide, to align with the updates in glyrepr v0.5.0.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.