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parse_iupac_extended() and
parse_iupac_short() now support generic monosaccharides,
e.g. “Hex”, “HexNAc”, “HexN”.parse_linear_code() to parse Linear Code
strings.auto_parse() now supports Linear Code strings.parse_iupac_extended().parse_wurcs().parse_iupac_short().parse_glycoct().glyrepr
v0.7.0.parse_iupac_condensed() and
parse_iupac_short() now require the reducing-end
monosaccharide to have anomer information. For example, “Neu5Ac(a2-” and
“Neu5Aca-” are valid, but “Neu5Ac” is not.parse_pglyco_struc() now support “aH” and “pH”
monosaccharides.auto_parse() to automatically detect and parse
different glycan structure string formats.Better error messages. Before:
> parse_iupac_condensed("bad_glycan")Error in `purrr::map()` at glyparse/R/struc-parser-wrapper.R:13:3:
ℹ In index: 1.
Caused by error in `value[[3L]]()`:
! Could not parse IUPAC-condensed string: {.val {x}}
ℹ Invalid characters or format in IUPAC-condensed string
Run `rlang::last_trace()` to see where the error occurred.
Now:
> parse_iupac_condensed("bad_glycan")Error in `parse_iupac_condensed()`:
! Can't parse: "bad_glycan"
Run `rlang::last_trace()` to see where the error occurred.parse_glycoct() to parse glycans in GlycoCT
format.parse_iupac_short(),
parse_iupac_extended(),
parse_iupac_condensed(), parse_wurcs() now
support multiple substituents on the same monosaccharide, to align with
the updates in glyrepr v0.5.0.These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.