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Minor update to pass CRAN checks
removed imports for unused packages
removed dependency on deprecated sparse matrices
correct links in citations and vignettes
Updates maintainer contact details.
resolves vignette formatting #11
passes updated CRAN checks (links updated)
Update citation to reflect acceptance at JOSS
Update documentation (package help page, links and cross-references)
Critical changes to vignettes to reduce build time (required for regular CRAN checks)
Major stable release: note changes to results are possible! (legacy code should run without breaking)
Expanded documentation and examples (consolidate into fewer vignettes for clarity)
Resolves errors handling inhibiting edges
Efficiently compute a state matrix from a vector of edge properties from paths
Enables passing “sd” (standard deviation) to alter covariance of Sigma matrix
Adds methods for computing using Laplacian matrices
Adds function to compute simulations directly from an adjacency matrix
Migrates computing states to sigma (these matrices include inhibitions)
Initial CRAN release
Unit testing for all functions
Checking for compatible inputs
Passing layout parameters to plotting function
Full vignette of biological pathway
Merge plot_directed from function from plot.igraph to avoid github dependencies
Added example data for reactome pathways
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.