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haplo.ccs: Estimate Haplotype Relative Risks in Case-Control Data

‘haplo.ccs’ estimates haplotype and covariate relative risks in case-control data by weighted logistic regression. Diplotype probabilities, which are estimated by EM computation with progressive insertion of loci, are utilized as weights.

Benjamin French and Thomas Lumley

License is GPL-2 and GPL-3

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.