The hardware and bandwidth for this mirror is donated by METANET, the Webhosting and Full Service-Cloud Provider.
If you wish to report a bug, or if you are interested in having us mirror your free-software or open-source project, please feel free to contact us at mirror[@]metanet.ch.

haplotypes: Manipulating DNA Sequences and Estimating Unambiguous Haplotype Network with Statistical Parsimony

Provides S4 classes and methods for reading and manipulating aligned DNA sequences, supporting an indel coding methods (only simple indel coding method is available in the current version), showing base substitutions and indels, calculating absolute pairwise distances between DNA sequences, and collapses identical DNA sequences into haplotypes or inferring haplotypes using user provided absolute pairwise character difference matrix. This package also includes S4 classes and methods for estimating genealogical relationships among haplotypes using statistical parsimony and plotting parsimony networks.

Version: 1.1.3.1
Imports: methods, stats, utils, network, sna, ape, phangorn, plotrix
Published: 2023-07-15
DOI: 10.32614/CRAN.package.haplotypes
Author: Caner Aktas
Maintainer: Caner Aktas <caktas.aca at gmail.com>
License: GPL-2
URL: https://cran.r-project.org, https://biolsystematics.wordpress.com/r/
NeedsCompilation: no
Materials: README
CRAN checks: haplotypes results

Documentation:

Reference manual: haplotypes.pdf

Downloads:

Package source: haplotypes_1.1.3.1.tar.gz
Windows binaries: r-devel: haplotypes_1.1.3.1.zip, r-release: haplotypes_1.1.3.1.zip, r-oldrel: haplotypes_1.1.3.1.zip
macOS binaries: r-release (arm64): haplotypes_1.1.3.1.tgz, r-oldrel (arm64): haplotypes_1.1.3.1.tgz, r-release (x86_64): haplotypes_1.1.3.1.tgz, r-oldrel (x86_64): haplotypes_1.1.3.1.tgz
Old sources: haplotypes archive

Reverse dependencies:

Reverse suggests: RAINBOWR

Linking:

Please use the canonical form https://CRAN.R-project.org/package=haplotypes to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.