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Model bibliography

This page is a living bibliography of potential model sources for fit_model(). If you have recommendations for updates to this page, please either open an issue on our GitHub page (https://github.com/bmait101/hatchR/issues) or email either of Morgan (Morgan.Sparks@usda.gov) or Bryan (Bryan.Maitland@usda.gov).

Treat these as putative model sources, as we have generally not vetted them as usable in hatchR.

Bibliography

  1. Adelfio, L. A., S. M. Wondzell, N. J. Mantua, and G. H. Reeves. 2019. Warm winters reduce landscape-scale variability in the duration of egg incubation for coho salmon (Oncorhynchus kisutch) on the Copper River Delta, Alaska. Canadian Journal of Fisheries and Aquatic Sciences 76(8):1362–1375.

  2. Alderdice, D. F., and F. P. J. Velsen. 1978. Relation Between Temperature and Incubation Time for Eggs of Chinook Salmon (Oncorhynchus tshawytscha). Journal of the Fisheries Research Board of Canada 35(1):69–75.

  3. Austin, C. S., T. E. Essington, and T. P. Quinn. 2019. Spawning and emergence phenology of bull trout Salvelinus confluentus under differing thermal regimes. Journal of Fish Biology 94(1):191–195.

  4. Beacham, T. D., and C. B. Murray. 1990. Temperature, Egg Size, and Development of Embryos and Alevins of Five Species of Pacific Salmon: A Comparative Analysis. Transactions of the American Fisheries Society 119(6):927–945.

  5. Drinan, D. P., A. V. Zale, M. A. H. Webb, M. L. Taper, B. B. Shepard, and S. T. Kalinowski. 2012. Evidence of Local Adaptation in Westslope Cutthroat Trout. Transactions of the American Fisheries Society 141(4):872–880.

  6. Fuhrman, A. E., D. A. Larsen, E. A. Steel, G. Young, and B. R. Beckman. 2018. Chinook salmon emergence phenotypes: Describing the relationships between temperature, emergence timing and condition factor in a reaction norm framework. Ecology of Freshwater Fish 27(1):350–362.

  7. Gorodilov, Y. N. 1996. Description of the early ontogeny of the Atlantic salmon, Salmo salar, with a novel system of interval (state) identification. Environmental Biology of Fishes 47(2):109–127.

  8. Hendry, A. P., J. E. Hensleigh, and R. R. Reisenbichler. 1998. Incubation temperature, developmental biology, and the divergence of sockeye salmon (Oncorhynchus nerka) within Lake Washington. Canadian Journal of Fisheries and Aquatic Sciences 55(6):1387–1394.

  9. Hubert, W. A., R. W. Stonecypher, W. A. Gern, and J. Bobbit. 1994. Communications: Response of Cutthroat Trout Embryos to Reduced Incubation Temperatures at Different Developmental Stages. The Progressive Fish-Culturist 56(3):185–187.

  10. Konecki, J. T., C. A. Woody, and T. P. Quinn. 1995. Influence of temperature on incubation rates of Coho Salmon (Oncorhynchus kisutch) from ten Washington populations. Northwest Science 69(2):126–132.

  11. Merriman, D. 1935. The Effect of Temperature on the Development of the Eggs and Larvae of the Cut-Throat Trout (Salmo Clarkii Clarkii Richardson). Journal of Experimental Biology 12(4):297–305.

  12. Murray, C. B., T. D. Beacham, and J. D. McPhail. 1990. Influence of parental stock and incubation temperature on the early development of coho salmon ( Oncorhynchus kisutch ) in British Columbia. Canadian Journal of Zoology 68(2):347–358.

  13. Pepin, P. 1991. Effect of Temperature and Size on Development, Mortality, and Survival Rates of the Pelagic Early Life History Stages of Marine Fish. Canadian Journal of Fisheries and Aquatic Sciences 48(3):503–518.

  14. Quinn, T. P. 2018. The Behavior and Ecology of Pacific Salmon and Trout. University of Washington Press.

  15. Rooke, A. C., B. Palm-Flawd, and C. F. Purchase. 2019. The impact of a changing winter climate on the hatch phenology of one of North America’s largest Atlantic salmon populations. Conservation Physiology 7(1):coz015.

  16. Small, B. C., and T. D. Bates. 2001. Effect of Low-Temperature Incubation of Channel Catfish Ictalurus punctatus Eggs on Development, Survival, and Growth. Journal of the World Aquaculture Society 32(2):189–194.

  17. Smith, K. M., and D. K. King. 2005. Dynamics and extent of larval lake sturgeon Acipenser fulvescens drift in the Upper Black River, Michigan. Journal of Applied Ichthyology 21(3):161–168.

  18. Sparks, M. M., P. A. H. Westley, J. A. Falke, and T. P. Quinn. 2017. Thermal adaptation and phenotypic plasticity in a warming world: Insights from common garden experiments on Alaskan sockeye salmon. Global Change Biology 23(12):5203–5217.

  19. Tang, J., M. D. Bryant, and E. L. Brannon. 1987. Effect of Temperature Extremes on the Mortality and Development Rates of Coho Salmon Embryos and Alevins. The Progressive Fish-Culturist 49(3):167–174.

  20. Webster, D. A. 1948. Relation of Temperature to Survival and Incubation of the Eggs of Smallmouth Bass (Micropterus Dolomieu). Transactions of the American Fisheries Society 75(1):43–47.

  21. Zeigler, M. P., S. F. Brinkman, C. A. Caldwell, A. S. Todd, M. S. Recsetar, and S. A. Bonar. 2013. Upper Thermal Tolerances of Rio Grande Cutthroat Trout under Constant and Fluctuating Temperatures. Transactions of the American Fisheries Society 142(5):1395–1405.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.