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heatwaveR 0.4.6 (2021-10-26)

• Updated SST time series to 2020-12-31

heatwaveR 0.4.6 (2021-10-25)

• Explicitly loading Rcpp due to a change in the behaviour of the package causing ERRORs on CRAN checks

heatwaveR 0.4.5.9002 (2021-09-21)

• Updated the MCS colour palette throughout the package
  • The new colour palette is very similar, but with improved contrast
• Made a minor but important change to category() so that categories are based on temperature greater (lesser) than the thresholds and not greater (lesser) than or equal to

heatwaveR 0.4.5.9001 (2021-08-25)

• Updated the visualisation vignette to now include the code necessary to get geom_flame() to work with plotly now that it is no longer directly supported

heatwaveR 0.4.5.9001 (2021-03-17)

• Improved error trapping for ts2clm(), detect_event(), and exceedance()

heatwaveR 0.4.5.9000 (2021-02-10)

• Added more citations of the package

heatwaveR 0.4.5.9000 (2021-01-31)

• Added a categories argument to detect_event()
  • This allows one to determine the categories of events directly, rather than as a second step using the category() function

heatwaveR 0.4.5 (2021-01-23)

• Created a new vignette that shows how to save gridded MHW results to a NetCDF file

heatwaveR 0.4.5 (2021-01-07)

• Pushed new major version to CRAN

heatwaveR 0.4.4.9006 (2021-01-06)

• Some minor tweaks to satisfy CRAN

heatwaveR 0.4.4.9005 (2020-12-30)

• Pushing to GitHub actions now triggers codecov correctly

heatwaveR 0.4.4.9005 (2020-12-22)

• exceedance now outputs a one row all NA data.frame when there are no events in exceedance of the threshold
• The previous version would return an error if no exceedances were detected, making it generally unusable in gridded data
• All plotly dependencies were removed due to the orphaning of the package
  • The code to allow geom_flame to work with plotly may be found here: https://github.com/robwschlegel/MHWapp/blob/master/shiny/functions.R

heatwaveR 0.4.4.9004 (2020-12-16)

• Moved away from Travis CI to GitHub actions

heatwaveR 0.4.4.9004 (2020-11-18)

• Fixed bug in proto_event that caused joinAcrossGaps argument to flag the first n days of a time series as part of an event

heatwaveR 0.4.4.9003 (2020-11-13)

• Minor fixes for passing build

heatwaveR 0.4.4.9002 (2020-11-06)

• Remove the last offending trace of zoo from make_whole.
• Fix miscellaneous typos and formatting inconsistencies.

heatwaveR 0.4.4.9001 (2020-10-31)

• Added MCScorrect argument to catgegory function that allows the user to bound the bottom threshold for MCS categories to -1.8C

heatwaveR 0.4.4.9000 (2020-07-30)

• dplyr v1.0.0 no longer handles empty data.frames the same

  • It now forces them to logical type, so empty data.frames no longer unnest with normal results
  • This was fixed by having detect_event and category return single row NA data.frames instead

• Thinking about phasing out data.table

heatwaveR 0.4.4 (2020-06-27)

• Released v0.4.4 to CRAN

heatwaveR 0.4.3.9001 (2020-06-26)

• Re-wrote OISST and gridded detection vignettes after finding an ERDDAP server that hosts the NOAA OISST v2.1 data.
• Updated the packaged time series to now use v2.1 data from 1982 to 2019

heatwaveR 0.4.3.9000 (2020-06-25)

• Minor bug fix in gridded detection vignette

heatwaveR 0.4.3.9000 (2020-06-15)

• category() now works with MCS generated by detect_event()
• codecov pushed back up to 100%

heatwaveR 0.4.3 (2020-06-12)

• Release pushed to CRAN in light of changes to data.table and dplyr
• Waiting until NOAA OISST data area available on an ERDDAP server before updating them

heatwaveR 0.4.2.9005 (2020-06-06)

• Updated the gridded data vignette to work with OISST v2.1

heatwaveR 0.4.2.9005 (2020-06-03)

• Ensured that newly released dplyr v1.0.0 did not introduce any bugs
• Updated vignettes to now work with v2.1 of the OISST data

heatwaveR 0.4.2.9004 (2020-05-15)

• Fixed bug in detect_event() caused by data.table

  • data.table no longer allows rounding of NA values

heatwaveR 0.4.2.9003 (2020-05-08)

• Fixed bug in event_line() caused by data.table

heatwaveR 0.4.2.9002 (2020-05-05)

• Cleaned up the CITATION file

heatwaveR 0.4.2.9002 (2020-03-23)

• Improvement to legend appearance for event_line()
• Improvement to plotting in category vignette

heatwaveR 0.4.2.9001 (2020-02-24)

• Minor spelling error fixes
• Minor tweak to make_whole_fast()

heatwaveR 0.4.2.9001 (2020-02-13)

• Added a new citation that used the heatwaveR package

heatwaveR 0.4.2.9001 (2020-02-05)

• Minor internal tweak to exceedance function

heatwaveR 0.4.2.9001 (2020-01-13)

• Added one small test to get codecov back up to 100%

heatwaveR 0.4.2.9001 (2020-01-08)

• Beginning to phase out dplyr and tibble dependencies
• Replacing some dplyr functions with plyr as they appear to be slightly faster and also don’t have the same multicore issues that more recent dplyr developments have created
• Added roundRes argument to detect_event() to allow users to decide the rounding precision of the returned results

heatwaveR 0.4.2 (2019-12-10)

• Minor change to ts2clm() that does not alter any functionality

heatwaveR 0.4.2 (2019-11-29)

• Publishing new stable version to CRAN due to removal of tidyverse from the list of suggested packages and the important bug fixes to category()

heatwaveR 0.4.2 (2019-11-26)

• Fixed bug in category() that incorrectly returned the difference between seas and thresh as the daily intensity value, rather than the actual temperature anomaly above seas

  • Also fixed the labelling of days below thresh as Moderate, they are now NA

• category() now adds lower case letters to the ends of event names if there were multiple large events within the same year

  • This may cause backwards compatibility issues in very rare cases, but is a necessary change

• Added roundVal argument to category() to allow users to decide the rounding precision of the returned results

heatwaveR 0.4.1.9004 (2019-11-23)

• Tripled the resolution of the logo in anticipation of creating hex stickers

heatwaveR 0.4.1.9004 (2019-11-19)

• Removed tidyverse from the list of suggested packages

heatwaveR 0.4.1.9003 (2019-11-03)

• The potentially backward compatibility breaking design change to have empty data.frames returned as one row of NA values was not as rare of a problem as first thought
• While still respecting the need to not use 1:n vector creation, detect_event() and category() now produce empty data.frames and not one row NA dataframe
• This should ensure continued backwards compatibility

heatwaveR 0.4.1.9002 (2019-11-03)

• A bug was discovered where the ts2clm() function does not first check that the time series being fed to it is in correct chronological order

  • This was fixed by ordering the data being fed to the function before beginning of the further calculations

heatwaveR 0.4.1.9001 (2019-10-30)

• An update to data.table sometime in August, 2019 reduced the packages tolerance for code with 1:n in it

  • As this is a potential memory weakness, when this creates an empty vector in multicore calculations it causes the entire run to fall over
  • Therefore, all use of 1:n has been replaced with seq_len(n)
  • This changed the list outputs when no MHWs are detected to be one row of NA values, rather than an empty list
  • This may cause backward compatibility issues, but is extremely unlikely

heatwaveR 0.4.1.9000 (2019-10-26)

• An update to the ggplot2 package some time back in August, 2019 changed slightly how Geoms work internally

  • This allowed geom_lolli() to fall over in very rare circumstances so this issue has been addressed

heatwaveR 0.4.1 (2019-09-09)

• Updated the OISST Preparation vignette to match the improvements to the rerddap package

• Also updated the vignette to be more clear to contact NOAA about data retrieval issues

• Added season argument to category(), which allows the user to specify which season of the MHWs they are interested in:

  • ‘range’ - The beginning and ending season of the MHW
  • ‘start’ - The season during the start of the MHW
  • ‘peak’ - The season during the peak of the MHW
  • ‘end’ - The season during the end of the MHW

heatwaveR 0.4.0.9000 (2019-07-22)

• Updated NOAA OISST data downloading tutorial to account for minor changes to NOAA ERDDAP servers

heatwaveR 0.4.0 (2019-07-10)

• Introduced the Algiers time series for examples on using multiple thresholds for atmospheric data
• Fixed a bug in event_line()

heatwaveR 0.4.0 (2019-07-09)

• Changed the data.table and ggplot2 dependencies to imports
• heatwaveR is now dependency free

heatwaveR 0.3.6.9004 (2019-05-29)

• Added the ability to choose the number of digits rounded to for the output of ts2clm()

heatwaveR 0.3.6.9003 (2019-02-11)

• Updated the end date for three time series packaged with heatwaveR to 2018-12-31

heatwaveR 0.3.6.9002 (2019-02-11)

• Added n and n_gap arguments to geom_flame() to allow proper screening of heatspikes
• These additions also propagate through to geom2trace.GeomFlame

heatwaveR 0.3.6.9001 (2019-01-28)

• Added some additional options to event_line() to allow users to manipulate the output more without having to get into the source code.

heatwaveR 0.3.6.9000 (2019-01-23)

• Added S3 object geom2trace.GeomFlame that now allows geom_flame() to be converted to an interactive plotly object via plotly::ggplotly()

heatwaveR 0.3.6 (2019-01-16)

• Updated Zenodo badge to reflect the upload of v0.3.6

heatwaveR 0.3.6 (2019-01-16)

• Finished Alternative Thresholds (Complex Climatologies) vignette

• Bumped code coverage back up to 100%

• AN important potential backwards compatibility breaking change is that by default ts2clm() and exceedance() will no longer produce a var column

  • The argument var = TRUE may be given to produce this column

• Submitted v0.3.6 to CRAN

heatwaveR 0.3.5.9006 (2019-01-15)

• Began editing Alternative (Complex) Climatology vignette
• Changed the default argument for exceedance(maxPadLength) from 3 to FALSE to match the new default for ts2clm()
• Changed the default behaviour of event_line() to no longer require the user to provide start_date and end_date arguments

heatwaveR 0.3.5.9005 (2019-01-03)

• Corrected some typos in the gridded event detection vignette

heatwaveR 0.3.5.9004 (2019-01-02)

• First update of 2019
• Added ‘protoEvents’ argument to detect_events.R() for returning the proto events rather than a table for the event metrics

heatwaveR 0.3.5.9003 (2018-12-26)

• Boxing day update

heatwaveR 0.3.5.9003 (2018-12-21)

• Updated text for the OISST preparation vignette
• Updated text for the gridded event detection vignette

heatwaveR 0.3.5.9003 (2018-12-19)

• Updated text on the landing page to better reflect the updates that have been made over the past few months
• Fixed typo in event_line() output
• Updated text for the detection and visualisation vignette
• Updated text for the exceedance vignette
• Updated text for the categories vignette
• Updated text for the OISST preparation vignette

heatwaveR 0.3.5.9003 (2018-12-18)

• Changed time series checking behaviour of exceedance() so that it is the same as ts2clm()

heatwaveR 0.3.5.9002 (2018-12-12)

• Fixed bug in event_line() that caused it to graph events outside of the spread range
• Expanded testing back up to 100%

heatwaveR 0.3.5.9001 (2018-12-06)

• Fixed bug caused by R not liking dates older than 1970-01-01
• Changed maxPadLength behaviour in ts2clm() to match the Python default settings

heatwaveR 0.3.5.9000 (2018-12-05)

• Added ‘duration_max’ to block_average() output
• Resumed correct version numbering

heatwaveR 0.3.5 (2018-12-03)

• Increased functionality of block_average()

heatwaveR 0.3.5 (2018-11-01)

• Updated one figure in a vignette

heatwaveR 0.3.5 (2018-10-26)

• clim_calc() reinstated to allow for calculation of clims with missing data
• var calculations reinstated for documentation issues

heatwaveR 0.3.5 (2018-10-20)

• ts2clm() no longer calls clim_calc(), but clim_calc_cpp() only
• smooth_percentile() no longer provides option to create variance climatology (the need to no longer create var seemed to not be fully implemented in 0.3.4)

heatwaveR 0.3.4 (2018-10-19)

• ts2clm() no longer calculates variance column by default
• make_whole() has been deprecated in favour of make_whole_fast()

heatwaveR 0.3.4 (2018-10-17)

• All major functions now produce results only up to the fourth decimal place

heatwaveR 0.3.4 (2018-10-16)

• Clarified some information on the basic detection vignette
• Corrected a link that went to the wrong page

heatwaveR 0.3.4 (2018-10-03)

• Changed error handling in proto_event() to return no events than to stop message with an error.
• This change was picked up by detect_event() without any required changes
• category() required a bit of cajoling to also output a blank dataframe

heatwaveR 0.3.4 (2018-10-01)

• Minor tweak to make_whole_fast() to provide a cleaner internal output

heatwaveR 0.3.4 (2018-09-28)

• Removed several unnecessary columns from category climatology output

heatwaveR 0.3.4 (2018-09-27)

• Fixed bug in ts2clm() that prevented calculation of clims with large contiguous missing periods of data (e.g. ice coverage).
• Added argument to category() that allows one to have the function also output the day-to-day (long) category values, rather than just the summary (wide) output.
• Added lon/lat values to documentation for built-in time series

heatwaveR 0.3.3 (2018-08-23)

• Added CITATION file so that package citation is now set to JOSS article

heatwaveR 0.3.3 (2018-07-31)

• Added Zenodo DOI badge
• JOSS review process complete
• Added JOSS DOI badge

heatwaveR 0.3.3 (2018-07-25)

• BUG FIX: corrected issue with clim_calc_cpp not being able to calculate clims from baselines not beginning and ending on the Julian year by making clim_spread plug the gaps beforehand with row-wise means.
• Rebuilt pkgdown site to reflect version increase
• v0.3.3 submitted to CRAN

heatwaveR 0.3.2 (2018-07-23)

• Edits suggested through JOSS review

heatwaveR 0.3.2 (2018-07-12)

• Remove unneeded copies of data from functions to improve memory-use efficiency.

heatwaveR 0.3.1 (2018-07-10)

• BUG FIX: corrected issue with make_whole_fast which did not create a whole, complete time series (i.e. missing dates were still present); the missing dates caused clim_calc_cpp to fail

heatwaveR 0.3.0 (2018-06-22)

• Re-submitted to CRAN in anticipation of ggplot2 changes
• proto_event now handles all event calculations ‘in house’
• This allows detect_event to now be given a theoretically limitless number of thresholds

heatwaveR 0.2.7.9003 (2018-06-08)

• Logic catch for lolli_plot being asked to highlight more events than are present
• New vignette that looks at calculating more complex climatologies

heatwaveR 0.2.7.9002 (2018-06-07)

• Tweak to ts2clm

heatwaveR 0.2.7.9001 (2018-06-05)

• Tweaks to detect_event and exceedance

heatwaveR 0.2.7.9000 (2018-06-02)

• Unused Rcpp code removed from master branch
• Logo changed slightly
• Codecov back up to 100%
• Addressed one testthat issue that was causing the OSX CRAN build to fail
• Added CRAN link to pkgdown site
• Added Bug Report link to pkgdown site

heatwaveR 0.2.7 (2018-05-30)

• Accepted on CRAN

heatwaveR 0.2.7 (2018-05-28)

• Submitted to CRAN

heatwaveR 0.2.6.9002 (2018-05-25)

• Fixes to make_whole and testing
• Fixes to block_average
• No longer exporting make_whole and make_whole_fast
• No longer uses zoo for time series NA handling–made custom function to replace it
• Additional speed improvements
• Repair testthat tests

heatwaveR 0.2.6.9001 (2018-05-24)

• Moved all vignettes relating to the upcoming MHW_detection paper to that repo
• This helps to unclutter this repo as it should be primarily kept for package content

heatwaveR 0.2.6.9000 (2018-05-23)

• Added vignette that shows how tweaking arguments for detect changes the outputs between languages and how those outputs may differ
• Changed output of detect_event to better match Python version
• Corrections to testthat to match changes to detect_event output

heatwaveR 0.2.5.9003 (2018-05-22)

• Added C++ function, clim_calc_ccp() for faster climatology calculations; speed of climatology calculation comes down from 50.6 ms in R to 3.4 ms in C++ on my MacBook Pro (15-inch, 2017) 2.9 GHz Intel Core i7 16 GB RAM computer

heatwaveR 0.2.4.9003 (2018-05-21)

• Updated testthat for lolli_plot() and event_line()
• Updated testthat for ts2clm()
• Updated testthat for detect_event()

heatwaveR 0.2.4.9002 (2018-05-17)

• Take advantage of C++ speed enhancement in smooth_percentile() by using RcppRoll
• Update testthat accordingly

heatwaveR 0.2.3.9002 (2018-05-17)

• Basic R vs Python vignette finished

heatwaveR 0.2.3.9001 (2018-05-16)

• Minor fix to testthat
• codecov up to 100%
• Fix to geom_lolli() n argument
• Fix to lolli_plot() y-axis range
• Minor fix to make_whole()
• Skeleton of R vs Python vignette added

heatwaveR 0.2.3.9000 (2018-05-16)

• Major speed-up in the climatology creation function. clim_spread() now returns a matrix, not a data frame. This makes the loop in clim_calc() much faster. In testing with the sst_WA data, it leads to a 3.7 fold speed improvement (520 ms down to 140 ms).
• Speed-up of make_whole() (60 ms down to 40 ms)

heatwaveR 0.2.2.9000 (2018-05-15)

• Removed all instances of detect() in favour of the new pipeline
• Updated exceedance() to utilise the internal functions
• Updated object names in block_average()

heatwaveR 0.2.1.9001 (2018-05-15)

• Micro edits to documentation
• Testing for all exported and internal functions brought up to speed
• Ensuring that new ts2clm() and detect_event() pipeline returns the same results as the old make_whole() and detect() pipeline

heatwaveR 0.2.1.9000 (2018-05-14)

• Phasing in identical names as in the python version
• detect_event() now passing checks
• Must still test for MCSs
• The old detect() function was unpacked and simplified. Internal code is now in new functions, most of which will not be seen by the user. They are make_whole() proto_event(), clim_calc(), smooth_percentile(), clim_spread(), and ts2clm()
• ts2clm() used instead of detect_clim()
• Climatologies can now be calculated independently of the detect functionality
• exceedance() function testthat checks updated to account for change in variable naming

heatwaveR 0.2.0.9000 (2018-05-11)

• detect() has now been broken into detect_clim() and detect_event()
• These now also rely on internal functions
• The purpose of this is to create a family of functions that provide different options
• New vignette on making short climatologies.

heatwaveR 0.1.0.9000 (2018-05-10)

• One may now provide alternative baselines and climatologies to detect()

heatwaveR 0.0.7.9001 (2018-05-05)

• Testing for category()
• Testing for block_average()
• Testing for detect()
• Testing exceedance()
• Removed default threshold for exceedance()
• Tweaks to exceedance() error messages
• Testing for event_line()
• Testing for lolli_plot()
• Tweaks to lolli_plot() error messages

heatwaveR 0.0.7.9000 (2018-05-04)

• New category() function returns the category results for events
• Still requires testing and improved event naming scheme

heatwaveR 0.0.6.9000 (2018-05-03)

• Minor touch up to examples in geoms.R
• First draft of heatwaveR hex logo added to site
• Added category option to event_line()
• Simplifications and consistency checks to detect()
• Some writing on Baselines and climatology vignette

heatwaveR 0.0.5.9001 (2018-05-02)

• Fix to event_line() not plotting MCSs correctly
• Fix error with smooth_percentile and smooth_percentile_width descriptions that were interchanged in detect()
• Simplify initial lines of leap year calculations (remove redundant code)
• change from raster::quantile() to stats::quantile()

heatwaveR 0.0.5.9000 (2018-04-29)

• Add option to use a custom baseline to detect() as requested by Maxime Marin (), The University of Tasmania (IMAS) – CSIRO (O&A), and which is present in the python version of the package

heatwaveR 0.0.4.9000 (2018-04-28)

• Remove restriction to require full years for start/end points of climatology calculations in detect()
• Documentation updated accordingly
• Vignette on OISST data processing added

heatwaveR 0.0.3.9000 (2018-04-26)

• Removed rlang dependency
• Touch-up to block_average()
• Tested make_whole()
• Basic testing for other functions

heatwaveR 0.0.2.9000 (2018-04-25)

• Established theme for changelog
• Synced ganalytics
• Fixed event_line() to acknowledge column names other than t and temp
• Fixed lolli_plot() to use underlying geom_lolli()
• Search bar now live
• Removed all but one use of plyr code

heatwaveR 0.0.1.9000 (2018-04-24)

• Added a NEWS.md file to track changes to the package.
• Cloned RmarineHeatWaves package to this repo
• First build of pkgdown site live

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.