The hardware and bandwidth for this mirror is donated by METANET, the Webhosting and Full Service-Cloud Provider.
If you wish to report a bug, or if you are interested in having us mirror your free-software or open-source project, please feel free to contact us at mirror[@]metanet.ch.

Perform fast queries in R against a massive database of complete GWAS summary data

Lifecycle: stable R build status Codecov test coverage CRAN status r-universe

The OpenGWAS database comprises over 50,000 curated, QC’d and harmonised complete GWAS summary datasets and can be queried using an API. See here for documentation on the API itself. This R package is a wrapper to make generic calls to the API, plus convenience functions for specific queries.

Methods currently implemented:

There are a few convenience functions also:

See https://github.com/MRCIEU/gwasglue2 for information about how to connect the genotype and LD data to other packages involving colocalisation, finemapping, visualisation and MR.

Installation

Install from CRAN using:

install.packages("ieugwasr")

or install the developer version of ieugwasr with:

remotes::install_github("mrcieu/ieugwasr")

Browse the vignettes etc for information on how to use this package: https://mrcieu.github.io/ieugwasr/

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.