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added citation
added section to vignette on calculating g2 in real-world SNP datasets
deleted packages Hmisc and scales and exchanged with base R code
authors added
r2_hf() bound to 0-1
verbose argument added to g2_microsats and
g2_snps
section on how to extract genotypes from VCF file added to vignette
g2_resampling function deleted
simulate_g2 function added. This function simulates
genotypes from which different sized marker sets can be independently
drawn to estimate the precision and magnitude of g2 for a given dataset.
Also works with larger (SNP) datasets.
simulate_r2_hf function added. This function uses
the same simulation as simulate_g2 to estimate the expected
correlation between heteorzygosity and inbreeding for varying number of
markers. Also works with larger (SNP) datasets.
MLH function added. MLH is the unstandardized
version of the existing sMLH function.
subsets argument in r2_hf function
deprecated. Although you can infer the magnitude of the esimate by
subsampling, the variation in estimates is biased. It is recommended to
use the new simulate_r2_hf function instead.
Bootstrapping over individuals for r2_hf() and
r2_Wf()
plotting histograms with CI for r2_hf() and
r2_Wf()
r2_hf() has an additional plot argument now, specify
plottype = "histogram"to visualize bootstrapping or
plottype = "boxplot" to show the boxplots resulting from
resampling of different loci subsets.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.