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inbreedR

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Goal

inbreedR provides functions and workflows for the analysis of inbreeding and heterozygosity-fitness correlations (HFCs) based on molecular markers such as microsatellites and SNPs. In case of genomic data, it’s most useful for lower density datasets where it is unclear whether genotyped markers represent genome-wide diversity / inbreeding. It has four main application areas:

Installation

You can install the stable version of inbreedR from CRAN with:

install.packages("rptR")

Or the development version from GitHub with:

# install.packages("remotes")
remotes::install_github("mastoffel/inbreedR", build_vignettes = TRUE, dependencies = TRUE) 
# manual
browseVignettes("inbreedR")

If you find a bug, please report a minimal reproducible example in the issues.

Get started with inbreedR

To get started read the vignette:

vignette("inbreedR_step_by_step", package = "inbreedR")

Citation

Stoffel, M. A., Esser, M., Kardos, M., Humble, E., Nichols, H., David, P., & Hoffman, J. I. (2016). inbreedR: an R package for the analysis of inbreeding based on genetic markers. Methods in Ecology and Evolution, 7(11), 1331-1339.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.