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inferCSN

CRAN_Status_Badge R-CMD-check test-coverage pkgdown RStudio CRAN mirror downloads

Introduction

inferCSN is an R package for inferring Cell-Specific gene regulatory Network from single-cell RNA data.

inferCSN+ workflow diagram

Installation

You can install the released version from CRAN use:

install.packages("inferCSN")
# or
if (!require("pak", quietly = TRUE)) {
  install.packages("pak")
}
pak::pak("inferCSN")

You can install the development version from GitHub use pak:

if (!require("pak", quietly = TRUE)) {
  install.packages("pak")
}
pak::pak("mengxu98/inferCSN")

Usage

Examples

library(inferCSN)
data(example_matrix)

network <- inferCSN(
  example_matrix
)

More functions and usages about inferCSN? Please reference here.

Citation

If you use inferCSN in your work, please cite it reference here.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.