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Method for the calculation of copy numbers and calling of copy number alterations. The algorithm uses coverage data from amplicon sequencing of a sample cohort as input. The method includes significance assessment, correction for multiple testing and does not depend on normal DNA controls. Budczies (2016 Mar 15) <doi:10.18632/oncotarget.7451>.
| Version: | 2.2.2 |
| Imports: | shiny, zip |
| Published: | 2020-08-11 |
| DOI: | 10.32614/CRAN.package.ioncopy |
| Author: | Jan Budczies, Eva Romanovsky |
| Maintainer: | Jan Budczies <jan.budczies at med.uni-heidelberg.de> |
| License: | GPL-3 |
| NeedsCompilation: | no |
| In views: | Omics |
| CRAN checks: | ioncopy results |
| Reference manual: | ioncopy.pdf |
| Package source: | ioncopy_2.2.2.tar.gz |
| Windows binaries: | r-devel: ioncopy_2.2.2.zip, r-release: ioncopy_2.2.2.zip, r-oldrel: ioncopy_2.2.2.zip |
| macOS binaries: | r-release (arm64): ioncopy_2.2.2.tgz, r-oldrel (arm64): ioncopy_2.2.2.tgz, r-release (x86_64): ioncopy_2.2.2.tgz, r-oldrel (x86_64): ioncopy_2.2.2.tgz |
| Old sources: | ioncopy archive |
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These binaries (installable software) and packages are in development.
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