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On Affymetrix gene expression microarrays, a single gene may be measured by multiple probe sets. This can present a mild conundrum when attempting to evaluate a gene "signature" that is defined by gene names rather than by specific probe sets. This package provides a one-to-one mapping from gene to "best" probe set for four Affymetrix human gene expression microarrays: hgu95av2, hgu133a, hgu133plus2, and u133x3p. This package also includes the pre-calculated probe set quality scores that were used to define the mapping.
| Version: | 3.4.0 |
| Depends: | R (≥ 2.10) |
| Imports: | org.Hs.eg.db, AnnotationDbi |
| Published: | 2017-04-05 |
| DOI: | 10.32614/CRAN.package.jetset |
| Author: | Qiyuan Li, Aron Eklund |
| Maintainer: | Aron Eklund <eklund at cbs.dtu.dk> |
| License: | Artistic-2.0 |
| URL: | http://www.cbs.dtu.dk/biotools/jetset/ |
| NeedsCompilation: | no |
| Citation: | jetset citation info |
| Materials: | README NEWS |
| CRAN checks: | jetset results |
| Reference manual: | jetset.pdf |
| Vignettes: |
Using jetset |
| Package source: | jetset_3.4.0.tar.gz |
| Windows binaries: | r-devel: jetset_3.4.0.zip, r-release: jetset_3.4.0.zip, r-oldrel: jetset_3.4.0.zip |
| macOS binaries: | r-release (arm64): jetset_3.4.0.tgz, r-oldrel (arm64): jetset_3.4.0.tgz, r-release (x86_64): jetset_3.4.0.tgz, r-oldrel (x86_64): jetset_3.4.0.tgz |
| Old sources: | jetset archive |
| Reverse imports: | easyDifferentialGeneCoexpression, Patterns |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.