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library(licoread)
# this step is not needed if you know where your data are
path <- system.file("extdata/82z", package = "licoread")
# provide the location of your raw files to licoread
data <- licoread(path)
# if your location containes more than one file type, you will have to specify
# which files licoread should read
path <- system.file("extdata/mixed_files", package = "licoread")
gas_df_82z <- licoread(path, file_type = "82z")path_81x <- system.file("extdata/81x", package = "licoread")
gas_df_81x <- licoread(path_81x)
co2_df <- licoread_to_fluxible(
gas_df_81x,
"CO2",
datetime_col = "Date"
)
#> File type is 81x.
#> Unnesting the data...
#> Formatting datetime column...
#> Looking for start and end of each measurement...With the 82z file type, the name of measured gases is not so
intuitive. You can use the list_gases() function to list
all the gases present in the dataset.
list_gases(gas_df_82z)
#> File type is 82z.
#> [1] "LI-7810_CH4_DRY" "LI-7810_CO2_DRY" "LI-7820_N2O_DRY" "LI-7825_CO2"
ch4_dry <- licoread_to_fluxible(
gas_df_82z,
"LI-7810_CH4_DRY",
datetime_col = c("LI-8250_DATE", "LI-8250_TIME")
)
#> File type is 82z.
#> Unnesting the data...
#> Selecting the focus gas...
#> Formatting datetime column...
#> Looking for start and end of each measurement...These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.