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lumberjack
Lumberjack separates concerns between data processing and monitoring the process by allowing R programmers (analysts) to declare what objects to track, and how to track them.
Start tracking changes by adding a single line of code to an existing script.
# contents of 'script.R'
mydata <- read.csv("path/to/my/data.csv")
# add this line after reading the data:
start_log(mydata, logger=simple$new())
# Existing data analyses code here...
Next, run the script using lumberjack::run_file()
, and
read the logging info.
library(lumberjack)
run_file("script.R")
read.csv("mydata_simple.csv")
Every aspect of the logging process can be customized, including output file locations and the logger.
out <- mydata %L>%
start_log(logger = simple$new()) %L>%
transform(z = 2*sqrt(x)) %L>%
dump_log(file="mylog.csv")
read.csv("mylog.csv")
logger | description |
---|---|
simple |
Record whether data has changed or not |
cellwise |
Record every change in every cell |
expression_logger |
Record the value of user-defined expressions |
filedump |
Dump data to file after each change. |
A logger is a reference object (either R6 or Reference Class) with the following mandatory elements.
add(meta, input, output)
A method recording differences
between in- and output.dump(...)
A method dumping logging info.label
, A slot for setting a label.There is also an optional element:
stop(...)
A method that will be called before removing
a logger.install.packages("lumberjack")
library(lumberjack)
vignette("using_lumberjack", package="lumberjack")
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.