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This plot integrates annotation into a manhattan plot. The plot is implemented as a heatmap, which is binned using -log10(p-value) and chromosome position. Annotation currently supported is minor allele frequency and gene function high impact variants.
| Version: | 1.1 |
| Depends: | R (≥ 3.4.0) |
| Imports: | reshape2, ggplot2, ggrepel, gridExtra |
| Suggests: | R.utils, testthat |
| Published: | 2019-11-25 |
| DOI: | 10.32614/CRAN.package.manhplot |
| Author: | Chris Grace |
| Maintainer: | Chris Grace <cgrace at well.ox.ac.uk> |
| BugReports: | https://github.com/cgrace1978/manhplot/issues |
| License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| URL: | https://github.com/cgrace1978/manhplot/ |
| NeedsCompilation: | no |
| CRAN checks: | manhplot results |
| Reference manual: | manhplot.pdf |
| Package source: | manhplot_1.1.tar.gz |
| Windows binaries: | r-devel: manhplot_1.1.zip, r-release: manhplot_1.1.zip, r-oldrel: manhplot_1.1.zip |
| macOS binaries: | r-release (arm64): manhplot_1.1.tgz, r-oldrel (arm64): manhplot_1.1.tgz, r-release (x86_64): manhplot_1.1.tgz, r-oldrel (x86_64): manhplot_1.1.tgz |
| Old sources: | manhplot archive |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.