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mbX: A Microbiome Data Cleaning and Visualization Package

Utsav Lamichhane

Introduction

The mbX package provides functions for cleaning and visualizing microbiome data. This vignette demonstrates how to use ezclean() and ezviz() to transform and visualize your data.

Data Cleaning with ezclean()

```r file_mic <- system.file(“extdata”, “microbiome.csv”, package = “mbX”) file_meta <- system.file(“extdata”, “metadata.csv”, package = “mbX”) cleaned_data <- mbX::ezclean(file_mic, file_meta, “genus”, 10) head(cleaned_data)

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.