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mergeTrees: Aggregating Trees

Aggregates a set of trees with the same leaves to create a consensus tree. The trees are typically obtained via hierarchical clustering, hence the hclust format is used to encode both the aggregated trees and the final consensus tree. The method is exact and proven to be O(nqlog(n)), n being the individuals and q being the number of trees to aggregate.

Version: 0.1.3
Imports: Rcpp
LinkingTo: Rcpp
Published: 2019-07-15
DOI: 10.32614/CRAN.package.mergeTrees
Author: Audrey Hulot [aut, cre], Julien Chiquet ORCID iD [aut], Guillem Rigaill [aut]
Maintainer: Audrey Hulot <audrey.hulot at inra.fr>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation: yes
Materials: README NEWS
CRAN checks: mergeTrees results

Documentation:

Reference manual: mergeTrees.pdf

Downloads:

Package source: mergeTrees_0.1.3.tar.gz
Windows binaries: r-devel: mergeTrees_0.1.3.zip, r-release: mergeTrees_0.1.3.zip, r-oldrel: mergeTrees_0.1.3.zip
macOS binaries: r-release (arm64): mergeTrees_0.1.3.tgz, r-oldrel (arm64): mergeTrees_0.1.3.tgz, r-release (x86_64): mergeTrees_0.1.3.tgz, r-oldrel (x86_64): mergeTrees_0.1.3.tgz

Linking:

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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.