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This vignette provide installation for mixKernel instructions.

Installation of python dependencies

The following python modules are required for the functions performing feature selection in mixKernel: autograd, scipy, sklearn, numpy

pip3 install autograd
pip3 install scipy
pip3 install sklearn
pip3 install numpy

Installation of Bioconductor dependencies

Two Bioconductor packages are required for mixKernel installation: mixOmics and phyloseq:

install.packages("BiocManager")
BiocManager::install("mixOmics")
BiocManager::install("phyloseq")

mixKernel installation

Finally the installation is completed with:

install.packages("mixKernel")

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.